RetrogeneDB ID: | retro_ggor_699 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 11:18729673..18730086(-) | ||
Located in intron of: | ENSGGOG00000010359 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YWHAB | ||
Ensembl ID: | ENSGGOG00000004580 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 83.45 % |
Parental protein coverage: | 55.28 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | NATQPESKVFYLKMKGDYFRYLSEVASGDNKQTTVSNSQQAYQEAFEISKKE-MQPTHPIRLGLALNFSV |
...Q.....FYLKMKGDYFRYLS.VASGDNKQTTV.NSQQAYQEAFEISKKE.MQPTHP..LGLALNFSV | |
Retrocopy | SCSQFYTTIFYLKMKGDYFRYLSDVASGDNKQTTVWNSQQAYQEAFEISKKEEMQPTHPV*LGLALNFSV |
Parental | FYYEILNSPEKACSLAKTAFDEAI-AELDTLNEESYKDSTLIMQLLR-DNLTLWTSENQGDEGDAGEGE |
FY.EILNSPEKACSLAKT.FDEAI..ELDTLNEESYKDSTLIMQLL..D..TLWTSE.Q.DEGDAGEGE | |
Retrocopy | FYCEILNSPEKACSLAKTVFDEAITTELDTLNEESYKDSTLIMQLLG<DSVTLWTSEKQEDEGDAGEGE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .14 RPM | 379 .80 RPM |
SRP007412_cerebellum | 0 .08 RPM | 174 .93 RPM |
SRP007412_heart | 0 .00 RPM | 41 .78 RPM |
SRP007412_kidney | 0 .04 RPM | 240 .79 RPM |
SRP007412_liver | 0 .08 RPM | 97 .20 RPM |
SRP007412_testis | 0 .41 RPM | 126 .60 RPM |