RetrogeneDB ID: | retro_ggor_2795 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 9:39508802..39509533(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YWHAB | ||
Ensembl ID: | ENSGGOG00000004580 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 77.2 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 4 |
Parental | MTMDKSELVQKAKLAEQAERYDDMAAAMKAVTEQGHE-LSNEERNLLSVAYKNVVG-ARRSSWRVISSIE |
.TMDKS.LVQKA..AEQAER.DDMAAA.KA...QGH.....E..NL.S..YKN.VG.A..SSW..ISS.E | |
Retrocopy | VTMDKSVLVQKARPAEQAERGDDMAAARKAAMPQGHA<APAEDSNLPSATYKNTVG<AHCSSWILISSTE |
Parental | QKT-ERNEKKQQMGKEYRE-KIEAELQDICNDVLELLDKYLIPNATQPESKVFYLKMKGDYFRYLSEVAS |
Q.T..RNEK.QQMGKEY...K.EAEL.DICN.V.ELLDK.LIP.ATQPESKVF.LKM.GD.FRYLS.VAS | |
Retrocopy | QRT<RRNEK-QQMGKEYHG<KTEAELLDICNEVPELLDKSLIPHATQPESKVFCLKM*GDCFRYLSGVAS |
Parental | GDNKQTTVSNSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIAELD |
GDNKQTT..NSQQAYQE..EISKK.MQPTHPI.LGLALNFSVF.Y.ILNSPEKACSLA.TAFDEAIAELD | |
Retrocopy | GDNKQTTLLNSQQAYQETSEISKKDMQPTHPI*LGLALNFSVFCYGILNSPEKACSLANTAFDEAIAELD |
Parental | TLNEESYKDSTLIMQLLRDNLTLWTSENQGDEGDAGEGEN |
TLNEESYKDST..MQ.LRDNLTLWTS.NQGD.GDAGEGEN | |
Retrocopy | TLNEESYKDSTPTMQ*LRDNLTLWTSGNQGDAGDAGEGEN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .43 RPM | 379 .80 RPM |
SRP007412_cerebellum | 0 .35 RPM | 174 .93 RPM |
SRP007412_heart | 0 .00 RPM | 41 .78 RPM |
SRP007412_kidney | 0 .37 RPM | 240 .79 RPM |
SRP007412_liver | 0 .03 RPM | 97 .20 RPM |
SRP007412_testis | 0 .31 RPM | 126 .60 RPM |
Species | RetrogeneDB ID |
---|---|
Pongo abelii | retro_pabe_3454 |