RetrogeneDB ID: | retro_pabe_3519 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 9_random:11836721..11837177(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YWHAB | ||
Ensembl ID: | ENSPPYG00000011041 | ||
Aliases: | None | ||
Description: | 14-3-3 protein beta/alpha 14-3-3 protein beta/alpha, N-terminally processed [Source:UniProtKB/Swiss-Prot;Acc:A4K2U9] |
Percent Identity: | 66.24 % |
Parental protein coverage: | 58.78 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | VQKAKLAEQAERYDDMAAAMKAVTEQGHELSNEERNLLSVAYKNVVG-ARRSSWRVISSIEQKT-ERNEK |
.QKA..AEQAE..D..AAA.KA...QGH....E..NL.S..YKN.V..AR.SSW..ISS.E..T..RNEK | |
Retrocopy | IQKARPAEQAEHGDEVAAAGKAAMPQGHAPPAEDSNLPSATYKNTVR<ARHSSWILISSTERRT<RRNEK |
Parental | KQQMGKEYRE-KIEAELQDICNDVLELLDKYLIPNATQPESKVFYLKMKGDYFRYLSEVASGDNKQTTVS |
.QQMG.EYR..K.EAEL.DICN.V.ELLDK.LIP.ATQPESK.F.LKMKGD.F.YLS.VASGDNKQTT.. | |
Retrocopy | -QQMGEEYRG<KTEAELLDICNEVPELLDKSLIPHATQPESKAFCLKMKGDRFKYLSGVASGDNKQTTLL |
Parental | NSQQAYQEAFEISKKEM |
NSQ.AYQE..EIS.K.M | |
Retrocopy | NSQRAYQETSEIS*KDM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 376 .64 RPM |
SRP007412_cerebellum | 0 .00 RPM | 232 .99 RPM |
SRP007412_heart | 0 .00 RPM | 66 .02 RPM |
SRP007412_kidney | 0 .00 RPM | 179 .75 RPM |
SRP007412_liver | 0 .00 RPM | 90 .46 RPM |