RetrogeneDB ID: | retro_pabe_692 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 11:51639625..51640354(+) | ||
Located in intron of: | ENSPPYG00000003434 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YWHAB | ||
Ensembl ID: | ENSPPYG00000011041 | ||
Aliases: | None | ||
Description: | 14-3-3 protein beta/alpha 14-3-3 protein beta/alpha, N-terminally processed [Source:UniProtKB/Swiss-Prot;Acc:A4K2U9] |
Percent Identity: | 83.87 % |
Parental protein coverage: | 92.75 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 4 |
Parental | MDKSELVQKA-KLAEQAERYDDMAAAMKAVTEQGHELSNEERNLLSVAYKNVVGARRS-SWRVIS-SIEQ |
.D.SELVQKA..L.EQAERYDDMA.AMKAVTEQ.HELSNEERNLLSVAYKN.VG.RR..SW.VIS..... | |
Retrocopy | LDESELVQKA<QLTEQAERYDDMAVAMKAVTEQRHELSNEERNLLSVAYKNMVGDRRF<SWHVIS>ALSR |
Parental | KTERNEKKQQMGKEYREKIEAELQDICNDVLELLDKYLIPNATQPESKVFYLKMKGDYFRYLSEVASGDN |
K..RNEK.QQMG.E..EKIEAELQDIC.DVLELL.KYLI.N..Q.ESKVFYL.MKGDYFRYLSEVASGDN | |
Retrocopy | K-QRNEKWQQMGRE*HEKIEAELQDICYDVLELLHKYLILNSIQLESKVFYL*MKGDYFRYLSEVASGDN |
Parental | KQTTVSNSQQAYQEAFEISKK-EMQPTHPIRLGLA-LNFSVFYYEILNSPEKACSLAKTAFDEAIAELDT |
KQTTV.N.QQAYQEAFEISKK.EMQ.THPI.LGLA.LNFSVFYYEILNSPEKACSLAKT.FDEAI.ELDT | |
Retrocopy | KQTTVWNCQQAYQEAFEISKKEEMQATHPI*LGLA>LNFSVFYYEILNSPEKACSLAKTVFDEAITELDT |
Parental | LNEESYKDSTLIMQLLRDNLTLWTSENQGDEGDAGEGE |
LNEESYKDSTLIMQLLRD.LTLWTSENQ.DEGDAGEGE | |
Retrocopy | LNEESYKDSTLIMQLLRDSLTLWTSENQEDEGDAGEGE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .17 RPM | 376 .64 RPM |
SRP007412_cerebellum | 0 .00 RPM | 232 .99 RPM |
SRP007412_heart | 0 .09 RPM | 66 .02 RPM |
SRP007412_kidney | 0 .10 RPM | 179 .75 RPM |
SRP007412_liver | 0 .12 RPM | 90 .46 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_594 |