Parental gene:

YWHAB, ENSCJAG00000017664

Aliases:None
Description:tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:HGNC Symbol;Acc:12849]
Organism:Marmoset (Callithrix jacchus)
Coordinates:5:39032662..39056599(+)


>ENSCJAG00000017664
ATGACAATGGATAAAAGTGAGCTGGTACAGAAAGCCAAACTTGCTGAGCAGGCTGAGCGCTATGATGATATGGCTGCAGC
CATGAAGGCAGTCACAGAACAGGGACATGAACTCTCCAATGAAGAGAGAAATCTGCTCTCTGTTGCCTACAAGAATGTGG
TAGGTGCCCGCCGCTCTTCCTGGCGTGTCATCTCCAGCATTGAGCAGAAAACAGAGAGAAATGAGAAGAAGCAGCAGATG
GGCAAAGAGTACCGTGAGAAGATAGAGGCGGAACTGCAGGACATCTGCAATGACGTTCTGGAGCTGTTGGACAAATATCT
TATTCCCAATGCTACACAACCAGAAAGTAAGGTGTTCTACTTGAAAATGAAAGGAGATTATTTTAGGTATCTTTCTGAAG
TGGCATCTGGAGACAACAAACAAACCACTGTGTCGAACTCCCAGCAGGCTTACCAGGAAGCATTTGAAATTAGTAAGAAA
GAAATGCAGCCTACACACCCAATTCGACTTGGTCTGGCACTTAATTTCTCAGTCTTTTACTATGAGATTCTCAACTCTCC
TGAAAAGGCCTGCAGCCTGGCAAAAACGGCATTTGATGAAGCAATTGCTGAATTGGATACACTGAATGAAGAGTCTTATA
AAGACAGCACTCTGATTATGCAGTTACTTAGGGACAATCTCACTCTGTGGACATCGGAAAACCAGGGAGACGAAGGAGAC
GCTGGGGAGGGAGAGAACTAA

Library Parental gene expression (RPM)
SRP051959_spleen 184 .52 RPM
SRP051959_skeletal_muscle 55 .45 RPM
SRP051959_lymph_node 190 .27 RPM
SRP051959_lung 140 .83 RPM
SRP051959_liver 65 .93 RPM
SRP051959_kidney 101 .57 RPM
SRP051959_heart 91 .24 RPM
SRP051959_colon 142 .00 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000011796 ortholog_one2one 1 retrogene
retro_acar_8,
Choloepus hoffmanni ENSCHOG00000005782 ortholog_one2one 15 retrogenes
retro_chof_1049, retro_chof_1325, retro_chof_1630, retro_chof_1670, retro_chof_1975, retro_chof_22, retro_chof_2221, retro_chof_2350, retro_chof_2423, retro_chof_2619, retro_chof_326, retro_chof_352, retro_chof_487, retro_chof_707, retro_chof_971,
Callithrix jacchus ENSCJAG00000006394 within_species_paralog 2 retrogenes
retro_cjac_2197, retro_cjac_3127,
Callithrix jacchus ENSCJAG00000015844 within_species_paralog 5 retrogenes
retro_cjac_1769, retro_cjac_2164, retro_cjac_3000, retro_cjac_31, retro_cjac_881,
Dipodomys ordii ENSDORG00000001064 ortholog_one2one 14 retrogenes
retro_dord_235, retro_dord_236, retro_dord_255, retro_dord_256, retro_dord_258, retro_dord_259, retro_dord_262, retro_dord_263, retro_dord_332, retro_dord_442, retro_dord_545, retro_dord_681, retro_dord_725, retro_dord_9,
Echinops telfairi ENSETEG00000009967 ortholog_one2one 4 retrogenes
retro_etel_1221, retro_etel_1380, retro_etel_1536, retro_etel_1705,
Homo sapiens ENSG00000166913 ortholog_one2one 4 retrogenes
retro_hsap_4160, retro_hsap_4841, retro_hsap_622, retro_hsap_855,
Gorilla gorilla ENSGGOG00000004580 ortholog_one2one 2 retrogenes
retro_ggor_2795, retro_ggor_699,
Microcebus murinus ENSMICG00000000973 ortholog_one2one 7 retrogenes
retro_mmur_1044, retro_mmur_1100, retro_mmur_1288, retro_mmur_1576, retro_mmur_27, retro_mmur_305, retro_mmur_979,
Myotis lucifugus ENSMLUG00000006319 ortholog_one2one 1 retrogene
retro_mluc_871,
Macaca mulatta ENSMMUG00000013206 ortholog_one2one 3 retrogenes
retro_mmul_1061, retro_mmul_236, retro_mmul_673,
Monodelphis domestica ENSMODG00000016200 ortholog_one2one 2 retrogenes
retro_mdom_1557, retro_mdom_212,
Nomascus leucogenys ENSNLEG00000006643 ortholog_one2one 2 retrogenes
retro_nleu_42, retro_nleu_422,
Oryctolagus cuniculus ENSOCUG00000003002 ortholog_one2one 1 retrogene
retro_ocun_273,
Otolemur garnettii ENSOGAG00000008909 ortholog_one2many 3 retrogenes
retro_ogar_122, retro_ogar_1243, retro_ogar_2934,
Ochotona princeps ENSOPRG00000011836 ortholog_one2one 2 retrogenes
retro_opri_56, retro_opri_924,
Pongo abelii ENSPPYG00000011041 ortholog_one2one 5 retrogenes
retro_pabe_3453, retro_pabe_3454, retro_pabe_3519, retro_pabe_3520, retro_pabe_692,
Pan troglodytes ENSPTRG00000013529 ortholog_one2one 12 retrogenes
retro_ptro_1010, retro_ptro_1686, retro_ptro_2390, retro_ptro_2828, retro_ptro_2887, retro_ptro_3125, retro_ptro_3201, retro_ptro_3225, retro_ptro_412, retro_ptro_453, retro_ptro_594, retro_ptro_965,
Pteropus vampyrus ENSPVAG00000012662 ortholog_one2one 1 retrogene
retro_pvam_157,
Sarcophilus harrisii ENSSHAG00000011241 ortholog_one2one 1 retrogene
retro_shar_483,
Sus scrofa ENSSSCG00000007381 ortholog_one2one 1 retrogene
retro_sscr_506,
Ictidomys tridecemlineatus ENSSTOG00000003733 ortholog_one2one 1 retrogene
retro_itri_1214,
Tupaia belangeri ENSTBEG00000002806 ortholog_one2one 47 retrogenes
retro_tbel_1038, retro_tbel_1272, retro_tbel_1460, retro_tbel_1472, retro_tbel_1572, retro_tbel_1653, retro_tbel_1664, retro_tbel_2127, retro_tbel_2128, retro_tbel_2229, retro_tbel_2246, retro_tbel_228, retro_tbel_2371, retro_tbel_2373, retro_tbel_2379, retro_tbel_2397, retro_tbel_2512, retro_tbel_2536, retro_tbel_2540, retro_tbel_2542, retro_tbel_2583, retro_tbel_2584, retro_tbel_2615, retro_tbel_2617, retro_tbel_3502, retro_tbel_3554, retro_tbel_3604, retro_tbel_3642, retro_tbel_3743, retro_tbel_390, retro_tbel_3989, retro_tbel_3993, retro_tbel_40, retro_tbel_4101, retro_tbel_4121, retro_tbel_4338, retro_tbel_4447, retro_tbel_4456, retro_tbel_4459, retro_tbel_4510, retro_tbel_4514, retro_tbel_4604, retro_tbel_4664, retro_tbel_4690, retro_tbel_5, retro_tbel_705, retro_tbel_854,
Tarsius syrichta ENSTSYG00000006537 ortholog_one2one 4 retrogenes
retro_tsyr_1065, retro_tsyr_1473, retro_tsyr_1637, retro_tsyr_2084,
Tursiops truncatus ENSTTRG00000007615 ortholog_one2one 1 retrogene
retro_ttru_762,
Vicugna pacos ENSVPAG00000005023 ortholog_one2one 3 retrogenes
retro_vpac_396, retro_vpac_516, retro_vpac_9,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1002 66.89 58.94
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2. retro_cjac_2214 83.80 87.80
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Download FASTA sequences of all ENSCJAG00000017664 retrocopies