RetrogeneDB ID: | retro_cjac_1002 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 12:93194555..93194991(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YWHAB | ||
Ensembl ID: | ENSCJAG00000017664 | ||
Aliases: | None | ||
Description: | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:HGNC Symbol;Acc:12849] |
Percent Identity: | 66.89 % |
Parental protein coverage: | 58.94 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | DDMAAAMKAVTEQGHELSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTERNEKKQQ-MGKEYREKIEA |
D.MAA.MK.VTEQG..LSNEERNLLSVAYKNV..A..SSWRV.SSIE.K..R.....Q.M..EY.EKIE. | |
Retrocopy | DMMAACMKSVTEQGAALSNEERNLLSVAYKNVLVAHWSSWRVVSSIEKKNGRC*VIKQQMAREYIEKIEM |
Parental | ELQDICNDV-LELLDKYLIPNATQPESKVFYLKMKGDYFRYLSEVASGDNKQTTVSNSQQAYQEAFEISK |
EL.DI.NDV...LL.K...PNA.Q..SKVFYLKMK.....YL.EVA.GD.K...V..SQQAYQEAFEISK | |
Retrocopy | ELRDIRNDV<MSLLEKFVNPNASQAKSKVFYLKMKRG*YSYLAEVAAGDDKKGIVDQSQQAYQEAFEISK |
Parental | -KEMQPTH |
.KEMQPTH | |
Retrocopy | <KEMQPTH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .00 RPM | 142 .00 RPM |
SRP051959_heart | 0 .00 RPM | 91 .24 RPM |
SRP051959_kidney | 0 .00 RPM | 101 .57 RPM |
SRP051959_liver | 0 .00 RPM | 65 .93 RPM |
SRP051959_lung | 0 .00 RPM | 140 .83 RPM |
SRP051959_lymph_node | 0 .00 RPM | 190 .27 RPM |
SRP051959_skeletal_muscle | 0 .00 RPM | 55 .45 RPM |
SRP051959_spleen | 0 .00 RPM | 184 .52 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_622 |
Pan troglodytes | retro_ptro_453 |
Gorilla gorilla | retro_ggor_544 |