RetrogeneDB ID: | retro_dord_235 | ||
Retrocopylocation | Organism: | Kangaroo rat (Dipodomys ordii) | |
Coordinates: | GeneScaffold_6271:111260..111730(-) | ||
Located in intron of: | ENSDORG00000002144 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ywhab | ||
Ensembl ID: | ENSDORG00000001064 | ||
Aliases: | None | ||
Description: | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917] |
Percent Identity: | 60.87 % |
Parental protein coverage: | 89.39 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | NEKKQQMGKEYREKIEAELQDICNDVLELLDKYLIPNATQPESK-VFYLKMKGDYFRYLSEVASGDNKQT |
N......G.E.......E.....NDV..LL..YLIPN....ESK..FYLKMK.D...YL.EVA.GD.K.. | |
Retrocopy | NIEQKMEGAEKKQHMLQEHRKNSNDVQSLLEQYLIPNSS*AESK<IFYLKMKND---YLAEVATGDDKKG |
Parental | TVSNSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIAELDTLNEES |
.VS..QQAYQE.FEISK.EMQP.H.IR..LALNFSVF.YEILNSPE.AC..AKTAFD..IAELD.L.E.S | |
Retrocopy | IVSQTQQAYQEPFEISKREMQPMHSIR*CLALNFSVFCYEILNSPEEACFFAKTAFDKVIAELDSLSE*S |
Parental | YKDSTLIMQLLRDNLTLWTSE |
YKDS.LIM.LLR..L.LWT.. | |
Retrocopy | YKDSMLIM*LLRGKLALWTKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |