RetrogeneDB ID: | retro_tbel_4101 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_67302:4935..5651(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YWHAB | ||
Ensembl ID: | ENSTBEG00000002806 | ||
Aliases: | None | ||
Description: | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:HGNC Symbol;Acc:12849] |
Percent Identity: | 75.31 % |
Parental protein coverage: | 98.37 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MDKSELVQKAKLAEQAERYDDMAAAMKAVTEQGHELSNEERNLLSVAYKNVVGARRSSWRVIS-SIEQKT |
M....L.QKAKL...AERY.DMA..MK.VTEQG.ELSNE..NLLSVAYKNVVG.RRS.WRVIS.SIEQKT | |
Retrocopy | MENMKLIQKAKL---AERYEDMATCMKVVTEQGAELSNE*QNLLSVAYKNVVGGRRSAWRVIS<SIEQKT |
Parental | ERNEKKQQMGKEYREKIEAELQDICNDVLELLDKYLIPNATQPESKVFYLKMKGDYFRYLSEVASGDNKQ |
....KK.Q..K.Y..K.E.EL..IC..VLELLDKYLI.NAT.PESKVFYLKMKGDYFRYL.EVA.GD... | |
Retrocopy | DTSNKKLQLIKGYWKKVESELRSICTTVLELLDKYLIANATTPESKVFYLKMKGDYFRYLAEVACGDDRK |
Parental | TTVSNSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIAELDTLNEE |
.T..NSQ.AYQEAF.IS.KEMQPTHPIR.GLALN.SVFYYEILN.PE.AC.LAK.AFDEAIAELDTLNE. | |
Retrocopy | QTIDNSQGAYQEAFHISMKEMQPTHPIR*GLALNYSVFYYEILNNPELACTLAKSAFDEAIAELDTLNED |
Parental | SYKDSTLIMQLLRDNLTLWTSENQGDEGDAGEG |
SYKDSTLIMQLLRDNLTLWTS...G.E.DA.EG | |
Retrocopy | SYKDSTLIMQLLRDNLTLWTSDSAGEEYDAAEG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |