RetrogeneDB ID: | retro_tbel_2128 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_101411:5820..6474(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YWHAB | ||
Ensembl ID: | ENSTBEG00000002806 | ||
Aliases: | None | ||
Description: | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:HGNC Symbol;Acc:12849] |
Percent Identity: | 58.15 % |
Parental protein coverage: | 89.43 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | LVQKAKLAEQAERYDDMAAAMKAVTEQGHELSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTERNEKK |
..QKA.LA.QA..YD..A..MKAV.E....LSN.E.NLLSV...NVV...RS..RV.SSI.QKT....KK | |
Retrocopy | VTQKASLAVQAKCYDNRATCMKAVME*NTKLSNKECNLLSVTFENVVWGCRST*RVTSSIRQKTHTFYKK |
Parental | QQMGKE-YREKI--EAELQDICNDVLELLDKYLIPNATQPESKVFYLKMKGDYFRYLSEVASGDNKQTTV |
.Q..KE.YREK...E.EL......VLELLDKYLI.NA..PESKV.YLK.KGDYF.YL.E...GD.....V | |
Retrocopy | LQLIKE>YREKEKEESELRCTRTTVLELLDKYLIANAALPESKV-YLKRKGDYFPYLAEITRGDDGKQMV |
Parental | SNSQQAYQEAFEISKKEMQPTH-PIRLG-LALNFSVFYYEILNSPEKACSLAKTAFDEAIAEL-DTLNEE |
.NSQ.A.QEA....K.....TH.P.R.G.LALNF.VFY.E.L..PE.AC.LAKTA.D.A.AEL.DTLNE. | |
Retrocopy | DNSQGANQEALDSRK---DATHMPSRPG>LALNFPVFYCESLQNPELACALAKTALDGATAEL<DTLNED |
Parental | SYKDST-LIMQLLRDNL |
S..DST.LI..LLRD.. | |
Retrocopy | S-EDST<LITHLLRDSI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |