RetrogeneDB ID: | retro_tbel_2371 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_109609:75776..76228(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YWHAB | ||
Ensembl ID: | ENSTBEG00000002806 | ||
Aliases: | None | ||
Description: | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:HGNC Symbol;Acc:12849] |
Percent Identity: | 63.23 % |
Parental protein coverage: | 62.6 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | LQDICNDVLELLDKYLIPNATQPESKVFYLKMKGDYFRYLSEVASGDNKQTTVSNSQQAYQEAFEISKK- |
L...CND.L.LL.K.LIP.A.Q.ESKVFYLKMKGD...YL.EVA..D.K.T......QA........KK. | |
Retrocopy | LINTCNDALSLLEKSLIPHAYQIESKVFYLKMKGDNYCYLAEVANDDKKET--EDQSQA*HTLLKSVKK< |
Parental | EMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIAELDTLNEESYKDSTLIMQLLRDNLTLW |
EM.P.HPIRL.L.LNF.V..YEILNSPEK..SLA.TAFD.AIAE..TL.EESYK.STLIMQLLR.NLTL. | |
Retrocopy | EM*PIHPIRLVLVLNFYVLNYEILNSPEKTRSLAMTAFDGAIAEHTTLSEESYKNSTLIMQLLRYNLTL* |
Parental | TSENQGDEGDAGEGE |
T...QGD...A.EGE | |
Retrocopy | TLDTQGDKAKA-EGE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |