RetrogeneDB ID: | retro_tbel_4514 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_8727:3612..4260(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSTBEG00000012362 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YWHAB | ||
Ensembl ID: | ENSTBEG00000002806 | ||
Aliases: | None | ||
Description: | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:HGNC Symbol;Acc:12849] |
Percent Identity: | 71.89 % |
Parental protein coverage: | 86.18 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | VTEQGHELSNEERNLLSVAYKNVVGARRSSWRVISSIEQKT--ERNEKKQQMGKE-YREKIEAELQDICN |
VTE....LSNE.RNLLSVAY.NVVGARRSSWRVISSIEQKT....N.KK....K..Y.EKIE.EL...CN | |
Retrocopy | VTELNEPLSNEDRNLLSVAYRNVVGARRSSWRVISSIEQKTMADGNGKKLRKLKHIYWEKIEKELETVCN |
Parental | DVLELLDKYLIPNAT--QPESKVFYLKMKGDYFRYLSEVASGDNKQTTVSNSQQAYQEAFEISKKEMQPT |
.VL.LLDK.LI.N....Q.ESKVFYLKMKGDY.RYL.E.ASG..K...V..S..AY.EAFEISK..MQP. | |
Retrocopy | -VLALLDKFLIKNCNDFQYESKVFYLKMKGDYYRYLAELASGEKKNGVVEASEAAYKEAFEISKEHMQPM |
Parental | HPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIAELDTLNEESYKDSTLIMQLLRDNLTLWTSENQ |
HPIRLGLALNFSVFYYEI.N.PE.AC.LAK.AFD.AIAELDTLNE.SYKDSTLIMQLLRDNLTLWTS..Q | |
Retrocopy | HPIRLGLALNFSVFYYEIQNAPEQACLLAKQAFDAAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQ |
Parental | GDEGDAG |
..E...G | |
Retrocopy | DEEAGKG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |