RetrogeneDB ID: | retro_shar_483 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL849638.1:1350646..1351115(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YWHAB | ||
Ensembl ID: | ENSSHAG00000011241 | ||
Aliases: | None | ||
Description: | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:HGNC Symbol;Acc:12849] |
Percent Identity: | 66.88 % |
Parental protein coverage: | 63.41 % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 1 |
Parental | ELQDICNDVLELLDKYLILNATQPESKVFYLKMKGDYFRYLSEVASGDNKQT-TVSNSQQAYQEAFEISK |
ELQDIC.D.LELLDKY.IL...QPESK.FYLKMK.D..RY.S..AS..N....TVSN.QQAYQE.F.I.K | |
Retrocopy | ELQDICDDILELLDKYFILGDGQPESKIFYLKMKCD*VRYFSKMASEENNKK>TVSNYQQAYQEIFKIGK |
Parental | KEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIAELDTLNEESYKDSTLIMQLLRDNLTL |
K...PT.PI.L.LA..FSVF.YE.LNSPEKA.SL....F.E..AELD.LNEES.KDSTLIMQLLRDNLTL | |
Retrocopy | K*V*PTYPIQLDLAFKFSVFSYETLNSPEKA*SLT*MIFEEVMAELDKLNEESHKDSTLIMQLLRDNLTL |
Parental | WTSENQGDEGDAGEGEN |
..S.NQGD....G.GE. | |
Retrocopy | *RSKNQGDKTHFGKGES |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |