RetrogeneDB ID: | retro_tbel_4664 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_97197:6..566(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YWHAB | ||
Ensembl ID: | ENSTBEG00000002806 | ||
Aliases: | None | ||
Description: | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:HGNC Symbol;Acc:12849] |
Percent Identity: | 65.8 % |
Parental protein coverage: | 77.24 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | LSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTERNEKKQQMGKEYREKIEAEL-QDICNDVLELLDKY |
LSNEERNLLSVAYK.VVG.....WRVI.SI.Q...R...K.Q..K.YREK...EL....C..VLE.L..Y | |
Retrocopy | LSNEERNLLSVAYKYVVGGCGAAWRVI*SIKQEANR---KVQLLKDYREKAGSEL<ESVCTMVLE*LRTY |
Parental | LIPNATQPESKVFYLKMKGDYFRYLSEVASGDNKQTTVSNSQQAYQEAFEISKKEMQPTHPIRLGLALNF |
LI.NAT.PESKV..LKMKGDYF.YL.EVA.G.....T..N.Q.A.QEAF.IS.KEMQPTHPI.LGLALNF | |
Retrocopy | LIANATNPESKVVSLKMKGDYFQYLAEVAHGNDGKRTIDNPQGACQEAFDISMKEMQPTHPIHLGLALNF |
Parental | SVFYYEI-LNSPEKACSLAKTAFDEAIAE-LDTLNEESYKDSTLIMQLLRDNL |
SVFYYE..L..PE.AC.LAKTAFDEAIA..L..LN..S.KDSTL..QLLRDN. | |
Retrocopy | SVFYYET<LKNPELACTLAKTAFDEAIAM>LHMLNKDSQKDSTLVVQLLRDNV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |