RetrogeneDB ID: | retro_hsap_4841 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | X:63832572..63832978(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000227261 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YWHAB | ||
Ensembl ID: | ENSG00000166913 | ||
Aliases: | YWHAB, GW128, HEL-S-1, HS1, KCIP-1, YWHAA | ||
Description: | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:HGNC Symbol;Acc:12849] |
Percent Identity: | 73.19 % |
Parental protein coverage: | 54.88 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | EKKQQMGKEYREKIEAELQDI-CNDVL-ELLDKYLIPNATQPESKVFYLKMKGDYFRYLSEVASGDNKQT |
E.KQ....EY.EKIE..L.DI.CND.L...L.K.LIP.A.Q.ESKVFYLKMKGDY..YLSEVA.GD.K.. | |
Retrocopy | E*KQ*IV*EYKEKIEMKLGDI>CNDLL<PFLEKFLIPSASQAESKVFYLKMKGDYYGYLSEVAAGDHKKG |
Parental | TVSNSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNS-PEKACSLAKTAFDEAIAELDTLN |
.V..SQQAYQEAF.ISKKEMQ..HPIRLGLALN.SVFYYEILNS.PEKAC.LAKTA..EAIAELDTL. | |
Retrocopy | IVDQSQQAYQEAFGISKKEMQRAHPIRLGLALNYSVFYYEILNS>PEKACCLAKTAANEAIAELDTLS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 427 .87 RPM |
bodymap2_adrenal | 0 .00 RPM | 314 .12 RPM |
bodymap2_brain | 0 .00 RPM | 574 .14 RPM |
bodymap2_breast | 0 .00 RPM | 310 .10 RPM |
bodymap2_colon | 0 .00 RPM | 324 .15 RPM |
bodymap2_heart | 0 .00 RPM | 169 .92 RPM |
bodymap2_kidney | 0 .00 RPM | 403 .45 RPM |
bodymap2_liver | 0 .00 RPM | 106 .06 RPM |
bodymap2_lung | 0 .00 RPM | 277 .99 RPM |
bodymap2_lymph_node | 0 .00 RPM | 363 .77 RPM |
bodymap2_ovary | 0 .00 RPM | 335 .92 RPM |
bodymap2_prostate | 0 .00 RPM | 323 .54 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 139 .66 RPM |
bodymap2_testis | 0 .00 RPM | 284 .76 RPM |
bodymap2_thyroid | 0 .00 RPM | 265 .90 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 895 .11 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_200652 | 981 libraries | 398 libraries | 422 libraries | 23 libraries | 5 libraries |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_3225 |
Gorilla gorilla | retro_ggor_3020 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |