RetrogeneDB ID:

retro_ttru_534

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:GeneScaffold_2616:307103..307687(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPL7
Ensembl ID:ENSTTRG00000009074
Aliases:None
Description:ribosomal protein L7 [Source:HGNC Symbol;Acc:10363]


Retrocopy-Parental alignment summary:






>retro_ttru_534
GAGAAGAAAAAGAAGGTTCCTGCTGTGCCAGAAACCCTTAAGAAAAAGCGAAAGAATTTCTCAGAGCTTAAGATCAAGCG
CCTGAGAAAGAAATTTGCCCAAAAGATGCTTCGAAAGGCAAGGAGGAAGCTTATCTATGAAAAAGCTAAGCACGATCACA
AGGAATACAGGCAGATGTATAGAACTGAAATTCGCATGGCTAGGATGGCAGGAAAAGCCGGCAACTTCTACGTAGCCACG
GAACCCAAATTGACGTTTGTCATCAGGATCAGAGGTATCAATGGTGTGAGCCCAAAGGTTCGAAAGGTGTTGCAGCTTCT
CCGACTCCATCAGATTTTCAATGGCACTTTTGTGAAGCTCAACAAGGCTTCAATTAACATGCTGAGAATTGTGGAACCAT
ACATTGCATGGAGGTACCCAACCTGAAGTCAGTAAATGAATTGATCTACAAGCGTGGTTATGGCAAAATCAACAAGAAGC
GAACTGCCCTGACAGATAACGTGTTGATTGCTCCATCTCTTGGCAAATACGGTATTATCTGCATGGAGGATCTGATTCAT
GAGATCTATACTGTTGGAAAACGT

ORF - retro_ttru_534 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 93.88 %
Parental protein coverage: 75.29 %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalEKKKKVPAVPETLKKKRKNFAELRIKRLRKKFAQKMLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMA
EKKKKVPAVPETLKKKRKNF.EL.IKRLRKKFAQKMLRKARRKLIYEKAKH.HKEYRQMYRTEIRMARMA
RetrocopyEKKKKVPAVPETLKKKRKNFSELKIKRLRKKFAQKMLRKARRKLIYEKAKHDHKEYRQMYRTEIRMARMA
ParentalRKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGY-
.KAGNFYV..EPKL.FVIRIRGINGVSPKVRKVLQLLRL.QIFNGTFVKLNKASINMLRIVEPYIAW.Y.
RetrocopyGKAGNFYVATEPKLTFVIRIRGINGVSPKVRKVLQLLRLHQIFNGTFVKLNKASINMLRIVEPYIAWRY<
ParentalPNLKSVNELIYKRGYGKINKKRIALTDNVLIARSLGKYGIICMEDLIHEIYTVGKR
PNLKSVNELIYKRGYGKINKKR.ALTDNVLIA.SLGKYGIICMEDLIHEIYTVGKR
RetrocopyPNLKSVNELIYKRGYGKINKKRTALTDNVLIAPSLGKYGIICMEDLIHEIYTVGKR

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_534 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_534 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 17 parental genes, and 241 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG0000002013922 retrocopies
Callithrix jacchus ENSCJAG000000076861 retrocopy
Equus caballus ENSECAG000000091881 retrocopy
Homo sapiens ENSG0000014760449 retrocopies
Latimeria chalumnae ENSLACG000000035711 retrocopy
Macropus eugenii ENSMEUG000000163199 retrocopies
Microcebus murinus ENSMICG000000028808 retrocopies
Macaca mulatta ENSMMUG000000051411 retrocopy
Monodelphis domestica ENSMODG000000071364 retrocopies
Otolemur garnettii ENSOGAG000000039032 retrocopies
Pongo abelii ENSPPYG0000001867150 retrocopies
Rattus norvegicus ENSRNOG0000000699227 retrocopies
Ictidomys tridecemlineatus ENSSTOG0000000458618 retrocopies
Tupaia belangeri ENSTBEG000000023011 retrocopy
Tarsius syrichta ENSTSYG0000000610025 retrocopies
Tursiops truncatus ENSTTRG000000069716 retrocopies
Tursiops truncatus ENSTTRG00000009074 16 retrocopies



Copyright © RetrogeneDB 2014-2017