RetrogeneDB ID: | retro_ptro_1766 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 3:26643773..26644207(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB3 | ||
Ensembl ID: | ENSPTRG00000022371 | ||
Aliases: | None | ||
Description: | high mobility group box 3 [Source:HGNC Symbol;Acc:5004] |
Percent Identity: | 64.19 % |
Parental protein coverage: | 71.5 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | KSKFDEMAKADKVRY-DREMKDYGPAKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAK |
K.K.........V.Y.D.EMKDY.PAKG.KKKK.P.A...PPS.FFLFCSEF.PKIKS..PG.S..DV.K | |
Retrocopy | KEKINLIKSQRWVKYADWEMKDYDPAKGHKKKKFPKAC*SPPSEFFLFCSEFYPKIKSPKPGVSVEDVTK |
Parental | -KL-GEMWN-NLNDSEKQPYITKAAKLKEKYEKDVADYKSKGKFDGAKGPAK-VARKKVEEEDEEEEEEE |
.KL.GEMW...L.DSEKQ..ITKA.KLKEKYEKDVAD.KSKGKFDG.KGP...V..KKVEE..E..EEEE | |
Retrocopy | <KLLGEMWD<CLSDSEKQSCITKAVKLKEKYEKDVADFKSKGKFDGSKGPTN>VTWKKVEEDKEDKEEEE |
Parental | EEEEEEED |
E...EE.. | |
Retrocopy | EMLGEEDE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 15 .23 RPM |
SRP007412_cerebellum | 0 .00 RPM | 12 .19 RPM |
SRP007412_heart | 0 .00 RPM | 12 .94 RPM |
SRP007412_kidney | 0 .00 RPM | 11 .40 RPM |
SRP007412_liver | 0 .00 RPM | 34 .86 RPM |
SRP007412_testis | 0 .00 RPM | 51 .95 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2621 |
Gorilla gorilla | retro_ggor_1834 |
Pongo abelii | retro_pabe_2339 |
Macaca mulatta | retro_mmul_1482 |