RetrogeneDB - Parental gene ENSG00000029993 details

							
>ENSG00000029993
ATGGCTAAAGGTGACCCCAAGAAACCAAAGGGCAAGATGTCCGCTTATGCCTTCTTTGTGCAGACATGCAGAGAAGAACA

TAAGAAGAAAAACCCAGAGGTCCCTGTCAATTTTGCGGAATTTTCCAAGAAGTGCTCTGAGAGGTGGAAGACGATGTCCG

GGAAAGAGAAATCTAAATTTGATGAAATGGCAAAGGCAGATAAAGTGCGCTATGATCGGGAAATGAAGGATTATGGACCA

GCTAAGGGAGGCAAGAAGAAGAAGGATCCTAATGCTCCCAAAAGGCCACCGTCTGGATTCTTCCTGTTCTGTTCAGAATT

CCGCCCCAAGATCAAATCCACAAACCCCGGCATCTCTATTGGAGACGTGGCAAAAAAGCTGGGTGAGATGTGGAATAATT

TAAATGACAGTGAAAAGCAGCCTTACATCACTAAGGCGGCAAAGCTGAAGGAGAAGTATGAGAAGGATGTTGCTGACTAT

AAGTCGAAAGGAAAGTTTGATGGTGCAAAGGGTCCTGCTAAAGTTGCCCGGAAAAAGGTGGAAGAGGAAGATGAAGAAGA

GGAGGAGGAAGAAGAGGAGGAGGAGGAGGAGGAGGATGAATAA

Library	Parental gene expression (RPM)
bodymap2_liver	45 .12 RPM
bodymap2_lung	11 .67 RPM
bodymap2_breast	9 .24 RPM
bodymap2_adipose	13 .14 RPM
bodymap2_adrenal	11 .38 RPM
bodymap2_skeletal_muscle	27 .32 RPM
bodymap2_thyroid	38 .51 RPM
bodymap2_prostate	6 .18 RPM
bodymap2_colon	9 .32 RPM
bodymap2_testis	35 .12 RPM
bodymap2_brain	31 .13 RPM
bodymap2_heart	3 .99 RPM
bodymap2_white_blood_cells	2 .80 RPM
bodymap2_lymph_node	8 .17 RPM
bodymap2_ovary	8 .56 RPM
bodymap2_kidney	13 .09 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Bos taurus	ENSBTAG00000005150	ortholog_one2many	2 retrogenes	retro_btau_190, retro_btau_38,
Choloepus hoffmanni	ENSCHOG00000005005	ortholog_one2one	2 retrogenes	retro_chof_1891, retro_chof_2010,
Callithrix jacchus	ENSCJAG00000003936	ortholog_one2many	9 retrogenes	retro_cjac_1596, retro_cjac_1950, retro_cjac_2343, retro_cjac_2469, retro_cjac_2470, retro_cjac_2738, retro_cjac_2900, retro_cjac_688, retro_cjac_965,
Dipodomys ordii	ENSDORG00000010826	ortholog_one2one	4 retrogenes	retro_dord_214, retro_dord_337, retro_dord_454, retro_dord_609,
Echinops telfairi	ENSETEG00000015689	possible_ortholog	4 retrogenes	retro_etel_104, retro_etel_1272, retro_etel_385, retro_etel_465,
Homo sapiens	ENSG00000164104	within_species_paralog	1 retrogene	retro_hsap_3663,
Homo sapiens	ENSG00000189403	other_paralog	37 retrogenes	retro_hsap_1230, retro_hsap_1357, retro_hsap_1504, retro_hsap_1589, retro_hsap_1608, retro_hsap_176, retro_hsap_1832, retro_hsap_1954, retro_hsap_2103, retro_hsap_2192, retro_hsap_2219, retro_hsap_2228, retro_hsap_2340, retro_hsap_2490, retro_hsap_2552, retro_hsap_2613, retro_hsap_2660, retro_hsap_2858, retro_hsap_2947, retro_hsap_3317, retro_hsap_3340, retro_hsap_3592, retro_hsap_3615, retro_hsap_3666, retro_hsap_382, retro_hsap_3942, retro_hsap_4003, retro_hsap_4109, retro_hsap_4309, retro_hsap_4669, retro_hsap_470, retro_hsap_4738, retro_hsap_4832, retro_hsap_525, retro_hsap_554, retro_hsap_758, retro_hsap_933,
Gorilla gorilla	ENSGGOG00000027164	ortholog_one2one	16 retrogenes	retro_ggor_1371, retro_ggor_1538, retro_ggor_1540, retro_ggor_1651, retro_ggor_1834, retro_ggor_2104, retro_ggor_2250, retro_ggor_2469, retro_ggor_2490, retro_ggor_2580, retro_ggor_272, retro_ggor_2944, retro_ggor_301, retro_ggor_414, retro_ggor_549, retro_ggor_618,
Myotis lucifugus	ENSMLUG00000010926	possible_ortholog	4 retrogenes	retro_mluc_1055, retro_mluc_1989, retro_mluc_215, retro_mluc_529,
Macaca mulatta	ENSMMUG00000004633	ortholog_one2one	20 retrogenes	retro_mmul_1003, retro_mmul_1115, retro_mmul_1143, retro_mmul_1303, retro_mmul_1341, retro_mmul_1482, retro_mmul_1568, retro_mmul_1624, retro_mmul_1799, retro_mmul_1957, retro_mmul_2106, retro_mmul_2425, retro_mmul_2451, retro_mmul_2469, retro_mmul_2484, retro_mmul_2526, retro_mmul_267, retro_mmul_399, retro_mmul_514, retro_mmul_597,
Monodelphis domestica	ENSMODG00000005735	ortholog_one2one	7 retrogenes	retro_mdom_1257, retro_mdom_1508, retro_mdom_1883, retro_mdom_1952, retro_mdom_587, retro_mdom_698, retro_mdom_831,
Mustela putorius furo	ENSMPUG00000011606	ortholog_one2many	2 retrogenes	retro_mputfur_138, retro_mputfur_26,
Mus musculus	ENSMUSG00000015217	ortholog_one2many	1 retrogene	retro_mmus_273,
Oryctolagus cuniculus	ENSOCUG00000005986	possible_ortholog	7 retrogenes	retro_ocun_1033, retro_ocun_1913, retro_ocun_1914, retro_ocun_534, retro_ocun_568, retro_ocun_891, retro_ocun_931,
Otolemur garnettii	ENSOGAG00000001773	ortholog_one2many	19 retrogenes	retro_ogar_1318, retro_ogar_1647, retro_ogar_1728, retro_ogar_187, retro_ogar_1930, retro_ogar_204, retro_ogar_2076, retro_ogar_2530, retro_ogar_2591, retro_ogar_2678, retro_ogar_2743, retro_ogar_2983, retro_ogar_3127, retro_ogar_3371, retro_ogar_343, retro_ogar_3433, retro_ogar_3479, retro_ogar_3513, retro_ogar_65,
Pongo abelii	ENSPPYG00000020818	ortholog_one2one	22 retrogenes	retro_pabe_1207, retro_pabe_1411, retro_pabe_1505, retro_pabe_1580, retro_pabe_1823, retro_pabe_1825, retro_pabe_1927, retro_pabe_2339, retro_pabe_2538, retro_pabe_2712, retro_pabe_2816, retro_pabe_3000, retro_pabe_3041, retro_pabe_3144, retro_pabe_3387, retro_pabe_3685, retro_pabe_3813, retro_pabe_410, retro_pabe_442, retro_pabe_560, retro_pabe_632, retro_pabe_784,
Pan troglodytes	ENSPTRG00000022371	ortholog_one2one	22 retrogenes	retro_ptro_1115, retro_ptro_1211, retro_ptro_1276, retro_ptro_1429, retro_ptro_1432, retro_ptro_1561, retro_ptro_174, retro_ptro_1766, retro_ptro_2066, retro_ptro_213, retro_ptro_2218, retro_ptro_2296, retro_ptro_2477, retro_ptro_2497, retro_ptro_2608, retro_ptro_2891, retro_ptro_2944, retro_ptro_3154, retro_ptro_3271, retro_ptro_456, retro_ptro_522, retro_ptro_629,
Pteropus vampyrus	ENSPVAG00000000219	ortholog_one2one	1 retrogene	retro_pvam_356,
Rattus norvegicus	ENSRNOG00000011096	ortholog_one2many	4 retrogenes	retro_rnor_1049, retro_rnor_2303, retro_rnor_2359, retro_rnor_2363,
Rattus norvegicus	ENSRNOG00000050910	ortholog_one2many	5 retrogenes	retro_rnor_1956, retro_rnor_2516, retro_rnor_2625, retro_rnor_720, retro_rnor_954,
Sarcophilus harrisii	ENSSHAG00000002916	ortholog_one2one	2 retrogenes	retro_shar_139, retro_shar_316,
Sus scrofa	ENSSSCG00000012745	ortholog_one2many	3 retrogenes	retro_sscr_1094, retro_sscr_466, retro_sscr_467,
Ictidomys tridecemlineatus	ENSSTOG00000023908	ortholog_one2many	6 retrogenes	retro_itri_1366, retro_itri_1527, retro_itri_1655, retro_itri_1749, retro_itri_777, retro_itri_909,
Tupaia belangeri	ENSTBEG00000003068	ortholog_one2one	18 retrogenes	retro_tbel_1002, retro_tbel_1230, retro_tbel_1579, retro_tbel_1700, retro_tbel_1819, retro_tbel_2543, retro_tbel_2730, retro_tbel_3261, retro_tbel_3476, retro_tbel_3623, retro_tbel_3781, retro_tbel_408, retro_tbel_410, retro_tbel_4203, retro_tbel_4209, retro_tbel_4299, retro_tbel_605, retro_tbel_698,
Tursiops truncatus	ENSTTRG00000000205	ortholog_one2one	2 retrogenes	retro_ttru_1187, retro_ttru_372,
Vicugna pacos	ENSVPAG00000000096	ortholog_one2one	2 retrogenes	retro_vpac_245, retro_vpac_434,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_hsap_627	84.55	64.89	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_hsap_1461	80.87	90.00	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_hsap_1873	87.05	96.00	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_hsap_2621	65.91	64.00	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_hsap_3064	83.24	91.49	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_hsap_3683	74.27	83.50	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_hsap_4251	91.56	79.79	Please wait, loading	Please wait, loading	Please wait, loading
8.	retro_hsap_4904	88.20	94.15	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSG00000029993 retrocopies

Parental gene:	HMGB3, ENSG00000029993
Aliases:	HMGB3, HMG-2a, HMG-4, HMG2A, HMG4
Description:	high mobility group box 3 [Source:HGNC Symbol;Acc:5004]
Organism:	*Human (Homo sapiens)*
Coordinates:	X:150148981..150159248(+)

Parental gene:

HMGB3, ENSG00000029993