RetrogeneDB ID: | retro_ptro_2944 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | AACZ03166123.1:275..879(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB3 | ||
Ensembl ID: | ENSPTRG00000022371 | ||
Aliases: | None | ||
Description: | high mobility group box 3 [Source:HGNC Symbol;Acc:5004] |
Percent Identity: | 78.43 % |
Parental protein coverage: | 99.5 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MAKGDPKKPKGKMSAYAF-FVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMS-GKEKSKFDEMAKADK |
MAK.DP.KPK.KMSA.AF.FV.TCREEHKKKNPEVPVNFAEFSKKCSE.WKTM...KEKSKFDEMAK.DK | |
Retrocopy | MAKDDPTKPKSKMSASAF<FV*TCREEHKKKNPEVPVNFAEFSKKCSEGWKTMY<SKEKSKFDEMAKVDK |
Parental | VRYDREMKDYGPAKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDV---AKKLGEMWNNLN |
V.YD.E.KDYGPAKGG.KKKDPNAPK.PPSGFFLF.SEFR.KIKST.P.ISIGD.......L.EM..NLN | |
Retrocopy | VHYDQEKKDYGPAKGGRKKKDPNAPKMPPSGFFLFYSEFRSKIKSTKPSISIGDAXXXXXXLSEM*SNLN |
Parental | DSEKQPYITKAAKLKEKYEKDVADYKSKGKFDGAKGPAKVARKKVEEEDEEEEEEEEEEEEEED |
DSEKQPYIT.AAKLKEKY.KDVAD.KSKGKFDGAK.PA.VARKKVEEE.EE....E.EE.EE.. | |
Retrocopy | DSEKQPYITQAAKLKEKYDKDVADSKSKGKFDGAKCPAEVARKKVEEEGEEDNKGEKEEKEEDE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 15 .23 RPM |
SRP007412_cerebellum | 0 .00 RPM | 12 .19 RPM |
SRP007412_heart | 0 .00 RPM | 12 .94 RPM |
SRP007412_kidney | 0 .00 RPM | 11 .40 RPM |
SRP007412_liver | 0 .00 RPM | 34 .86 RPM |
SRP007412_testis | 0 .00 RPM | 51 .95 RPM |