RetrogeneDB ID: | retro_ptro_629 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 11:85408797..85409316(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB3 | ||
Ensembl ID: | ENSPTRG00000022371 | ||
Aliases: | None | ||
Description: | high mobility group box 3 [Source:HGNC Symbol;Acc:5004] |
Percent Identity: | 70.06 % |
Parental protein coverage: | 88. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVR |
..K.DPKKPKG......FFVQ.CREE..KKNPEVPVNFA.FSK.CSE.W.TMS..EKSKFDE.AK.DKV. | |
Retrocopy | LPKSDPKKPKGLLNT--FFVQMCREEPNKKNPEVPVNFAKFSKQCSEKWQTMSRREKSKFDEVAKVDKVL |
Parental | YDREMKDYGPAKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDV-AKKLGEMWNNLNDSEK |
...EMKDY..AKGG..KKD.NA.KRPPSGFF.F.SE..PKIKSTNPGISIGDV....LGEMWNNL..SE. | |
Retrocopy | HVWEMKDYRSAKGG--KKDSNALKRPPSGFFQFFSEIYPKIKSTNPGISIGDVXXXXLGEMWNNLSNSEM |
Parental | QPYITKAAKLKEKYEKDVADYKSKGKFDGAKGPAKVA |
QP.I.K..KL.EK.EKDVAD.KSK.KFD..K.P.KVA | |
Retrocopy | QPCISKVVKLREKHEKDVADCKSKEKFDDEKNPTKVA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 15 .23 RPM |
SRP007412_cerebellum | 0 .00 RPM | 12 .19 RPM |
SRP007412_heart | 0 .00 RPM | 12 .94 RPM |
SRP007412_kidney | 0 .00 RPM | 11 .40 RPM |
SRP007412_liver | 0 .00 RPM | 34 .86 RPM |
SRP007412_testis | 0 .00 RPM | 51 .95 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_909 |
Pongo abelii | retro_pabe_784 |
Macaca mulatta | retro_mmul_1115 |