RetrogeneDB ID: | retro_ptro_2066 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 4:96546773..96547219(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB3 | ||
Ensembl ID: | ENSPTRG00000022371 | ||
Aliases: | None | ||
Description: | high mobility group box 3 [Source:HGNC Symbol;Acc:5004] |
Percent Identity: | 84. % |
Parental protein coverage: | 74.5 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | DPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDRE |
DPKKPKGK.SAYAFF.QTCREEHKKKNPEVPVNFAEFS.KC.ERWKTMSGKEKSKFDE.AK.DK.RYDR. | |
Retrocopy | DPKKPKGKISAYAFFGQTCREEHKKKNPEVPVNFAEFSTKCFERWKTMSGKEKSKFDETAKVDKERYDRK |
Parental | MKDYGPAKGGKKKKDPNAPK-RPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYI |
MKDYGPAK.GKK.KDPNAPK.RPPSGFFLFCSE.RPKIKSTN.GISIGDVAKKLGEM.NNL.D.EK.P.. | |
Retrocopy | MKDYGPAKRGKKEKDPNAPK<RPPSGFFLFCSELRPKIKSTNLGISIGDVAKKLGEM*NNLLDGEK*PCF |
Parental | TKAAKLKEKY |
..AAKL...Y | |
Retrocopy | PNAAKLMDMY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 15 .23 RPM |
SRP007412_cerebellum | 0 .00 RPM | 12 .19 RPM |
SRP007412_heart | 0 .00 RPM | 12 .94 RPM |
SRP007412_kidney | 0 .00 RPM | 11 .40 RPM |
SRP007412_liver | 0 .00 RPM | 34 .86 RPM |
SRP007412_testis | 0 .00 RPM | 51 .95 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3064 |
Gorilla gorilla | retro_ggor_2104 |
Pongo abelii | retro_pabe_2538 |
Macaca mulatta | retro_mmul_1957 |