RetrogeneDB ID: | retro_hsap_1559 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 15:43407899..43408691(-) | ||
Located in intron of: | ENSG00000166947 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000205871 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSG00000145425 | ||
Aliases: | RPS3A, FTE1, MFTL, S3A | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 94.32 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MAVGKNKRLTKGGKKGAKKKVVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVS |
MAVGKNK.LTKGGKKGAKKKVVDPFSKK.WYD.KAPAMFNI.NIGK.LVTRTQGTKIASD.LKG.VFEVS | |
Retrocopy | MAVGKNKSLTKGGKKGAKKKVVDPFSKKNWYDTKAPAMFNI*NIGKMLVTRTQGTKIASDDLKGHVFEVS |
Parental | LADLQNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCV |
LADLQNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDK.CSMVKKWQTMIEAHVDVKTTDGYLL.LFCV | |
Retrocopy | LADLQNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKTCSMVKKWQTMIEAHVDVKTTDGYLLHLFCV |
Parental | GFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDV |
GF.KKRNNQI.KTSYAQHQQVRQIRKKMMEI.TREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPL.DV | |
Retrocopy | GFNKKRNNQIWKTSYAQHQQVRQIRKKMMEITTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLRDV |
Parental | FVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYEPPVQESV |
FVRKVKMLKKPKFELG.LMELHGEGSSSGKATGDETGAKV.RADGYEPPVQESV | |
Retrocopy | FVRKVKMLKKPKFELGRLMELHGEGSSSGKATGDETGAKVGRADGYEPPVQESV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .60 RPM | 165 .82 RPM |
bodymap2_adrenal | 1 .47 RPM | 364 .03 RPM |
bodymap2_brain | 0 .07 RPM | 75 .31 RPM |
bodymap2_breast | 0 .49 RPM | 171 .42 RPM |
bodymap2_colon | 0 .89 RPM | 412 .69 RPM |
bodymap2_heart | 0 .02 RPM | 106 .78 RPM |
bodymap2_kidney | 0 .08 RPM | 159 .90 RPM |
bodymap2_liver | 0 .00 RPM | 109 .78 RPM |
bodymap2_lung | 0 .26 RPM | 488 .03 RPM |
bodymap2_lymph_node | 0 .07 RPM | 443 .21 RPM |
bodymap2_ovary | 1 .27 RPM | 526 .47 RPM |
bodymap2_prostate | 0 .59 RPM | 540 .27 RPM |
bodymap2_skeletal_muscle | 0 .02 RPM | 86 .34 RPM |
bodymap2_testis | 0 .30 RPM | 259 .98 RPM |
bodymap2_thyroid | 0 .62 RPM | 233 .87 RPM |
bodymap2_white_blood_cells | 0 .22 RPM | 665 .11 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_43708 | 785 libraries | 807 libraries | 230 libraries | 7 libraries | 0 libraries |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .79 RPM |
CEU_NA11843 | 0 .65 RPM |
CEU_NA11930 | 0 .39 RPM |
CEU_NA12004 | 0 .34 RPM |
CEU_NA12400 | 0 .42 RPM |
CEU_NA12751 | 0 .36 RPM |
CEU_NA12760 | 0 .67 RPM |
CEU_NA12827 | 0 .42 RPM |
CEU_NA12872 | 0 .49 RPM |
CEU_NA12873 | 0 .64 RPM |
FIN_HG00183 | 0 .58 RPM |
FIN_HG00277 | 0 .63 RPM |
FIN_HG00315 | 0 .25 RPM |
FIN_HG00321 | 0 .15 RPM |
FIN_HG00328 | 0 .40 RPM |
FIN_HG00338 | 0 .55 RPM |
FIN_HG00349 | 0 .48 RPM |
FIN_HG00375 | 0 .34 RPM |
FIN_HG00377 | 0 .35 RPM |
FIN_HG00378 | 0 .32 RPM |
GBR_HG00099 | 0 .38 RPM |
GBR_HG00111 | 0 .52 RPM |
GBR_HG00114 | 0 .37 RPM |
GBR_HG00119 | 0 .36 RPM |
GBR_HG00131 | 0 .55 RPM |
GBR_HG00133 | 0 .34 RPM |
GBR_HG00134 | 0 .33 RPM |
GBR_HG00137 | 0 .80 RPM |
GBR_HG00142 | 0 .61 RPM |
GBR_HG00143 | 0 .29 RPM |
TSI_NA20512 | 0 .28 RPM |
TSI_NA20513 | 0 .39 RPM |
TSI_NA20518 | 0 .42 RPM |
TSI_NA20532 | 0 .78 RPM |
TSI_NA20538 | 0 .51 RPM |
TSI_NA20756 | 0 .41 RPM |
TSI_NA20765 | 0 .19 RPM |
TSI_NA20771 | 0 .37 RPM |
TSI_NA20786 | 0 .29 RPM |
TSI_NA20798 | 0 .28 RPM |
YRI_NA18870 | 0 .41 RPM |
YRI_NA18907 | 0 .38 RPM |
YRI_NA18916 | 0 .23 RPM |
YRI_NA19093 | 0 .34 RPM |
YRI_NA19099 | 0 .24 RPM |
YRI_NA19114 | 0 .37 RPM |
YRI_NA19118 | 0 .56 RPM |
YRI_NA19213 | 0 .26 RPM |
YRI_NA19214 | 0 .17 RPM |
YRI_NA19223 | 0 .30 RPM |