RetrogeneDB ID: | retro_tbel_1232 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_421:30398..30940(+) | ||
Located in intron of: | ENSTBEG00000016280 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSTBEG00000002963 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 85.87 % |
Parental protein coverage: | 69.32 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | RKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQI- |
.KFKLITEDVQGKNCL.NFHGMD.T.DKMCSMVKKWQ.M.EAHVDVKTT..YLL.LF.VGFTK..N.QI. | |
Retrocopy | QKFKLITEDVQGKNCL-NFHGMDFTCDKMCSMVKKWQMMSEAHVDVKTTGSYLLCLFYVGFTKQGNHQI< |
Parental | RKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKK |
R..SYAQHQQVRQIRK.MMEI.TREVQTNDLKEVVNKLIPDSIGKD.EKACQSIYPLHDVFV.K.KMLKK | |
Retrocopy | RRASYAQHQQVRQIRK-MMEILTREVQTNDLKEVVNKLIPDSIGKDREKACQSIYPLHDVFVSKGKMLKK |
Parental | PKFELGKLMELHGEGSSSGKATGDETGAKVERADGYEPPVQESV |
P.FELGK.MELHGEGSSSGKATGDETGAKVERADGY.PP.Q.SV | |
Retrocopy | PTFELGKPMELHGEGSSSGKATGDETGAKVERADGYGPPGQKSV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |