RetrogeneDB ID: | retro_tbel_2200 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_104514:33030..33434(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSTBEG00000002963 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 72.99 % |
Parental protein coverage: | 51.52 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | GRVFEVSLADLQNDEVAFRKFKLITEDVQGKNC-LTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDG |
G.V.EVS......DEV.FRK..L.T..VQGK...LT..H.MDLT.DKMCSMVKKWQTMI.AHV.V.TT.G | |
Retrocopy | GHVCEVSCRSV-DDEVTFRKCRLVTNAVQGKHA<LTDVHVMDLTLDKMCSMVKKWQTMINAHVAV*TTGG |
Parental | YLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEK |
YLL.LFCVGFTKKRNNQIRKT.YA.HQQVRQ.RKKMMEIMT.EVQTNDLKEVVN.LIP.SI.K.... | |
Retrocopy | YLLHLFCVGFTKKRNNQIRKTCYAEHQQVRQVRKKMMEIMTWEVQTNDLKEVVNRLIPGSIRKHTKR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |