RetrogeneDB ID: | retro_tbel_116 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_1185:224836..225324(-) | ||
Located in intron of: | ENSTBEG00000004825 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSTBEG00000002963 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 78.7 % |
Parental protein coverage: | 61.74 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 6 |
Parental | RKF-KLITEDVQG-KNCLTNFHGMDLTRDKMCSMVK-KWQTMIEA-HVDVKTTDGYLLRLFCV-GFTKKR |
RKF..LI.EDVQG..NC..NFHGMD.TRDKMCSMVK.KWQTM.EA..VDVKTTDGYL.RLFCV.GFTKK. | |
Retrocopy | RKF>QLISEDVQG>RNCSPNFHGMDVTRDKMCSMVK<KWQTMTEA>QVDVKTTDGYLPRLFCV>GFTKKH |
Parental | NNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVK |
..Q.RKTS.AQHQQVRQI...MMEI.TRE...NDLKEVV.KLI.DS.GKDI.KACQSI.P.HDVFVR.VK | |
Retrocopy | SSQVRKTSSAQHQQVRQIQR-MMEIVTRELPANDLKEVVGKLISDSTGKDIGKACQSICPFHDVFVRGVK |
Parental | -MLKKPKFELGKLMELHGEGSSSGKATGD |
.ML.KPKFELGKLMELHGEG.SSGKATGD | |
Retrocopy | <MLRKPKFELGKLMELHGEGGSSGKATGD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |