RetrogeneDB ID: | retro_tbel_4220 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_72283:2788..3435(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSTBEG00000002963 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 78.54 % |
Parental protein coverage: | 81.44 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | GKTLVTRTQGTKIASDGLKGRVF-EVSL-ADLQNDEVAFRKFKLITED-VQGKNCLTNFHGMDLTRDKMC |
GKTLV.RTQGTK.ASDGL.G.V...VSL.ADLQND.V.FRKFKLI.E..VQGKNC.T.FHGMDLT.DKMC | |
Retrocopy | GKTLVARTQGTKTASDGLMGCVL<DVSL<ADLQNDKVTFRKFKLISEG>VQGKNCVTIFHGMDLTPDKMC |
Parental | SMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDL |
SMVKKWQT..E..VDVKTTD.YLL.LFCVGFT.K.N.QIR.TSY.QHQQV.QI.KKMMEIMT.EVQ.NDL | |
Retrocopy | SMVKKWQTITETRVDVKTTDNYLLYLFCVGFTVKCNSQIR*TSYSQHQQVCQIQKKMMEIMTWEVQMNDL |
Parental | KEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKK-PKFELGKLMELHGEGSSSGKATGDETGAKV |
KEVVNKLIPD.IGKDIEKA.QSI..LHDVFVRKVK.LKK......GKLMELHG.G.S.GKATGDE.GAKV | |
Retrocopy | KEVVNKLIPDGIGKDIEKARQSIFALHDVFVRKVKILKKQTQIAIGKLMELHGAGRSPGKATGDEKGAKV |
Parental | ERADGYEPP |
E.ADGYEPP | |
Retrocopy | EQADGYEPP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |