RetrogeneDB ID: | retro_tbel_3212 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_133982:13124..13747(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSTBEG00000004582 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSTBEG00000002963 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 83.73 % |
Parental protein coverage: | 78.79 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | IASDGLKGRVFEVSLADLQNDEVAFRKFKLITEDVQGKNC-LTNFHGMDLTRDKMCSMVKKWQTMIEAHV |
IASDGL..RV.EV.LADLQNDEVAFRKFKLITE.V.GK.C.LTNFHGMDLTRDKMCSMVKKWQTMIEAHV | |
Retrocopy | IASDGLESRVSEVRLADLQNDEVAFRKFKLITEGVKGKHC<LTNFHGMDLTRDKMCSMVKKWQTMIEAHV |
Parental | DVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGK |
.V..TDGYLL.LFCV.FTKK.NN.I.KTS.AQ.QQV..IRKKMMEI.T..VQTNDLKEV.NKLIPDS.GK | |
Retrocopy | IVRVTDGYLLHLFCVRFTKKCNNWIQKTSHAQQQQVHHIRKKMMEIKTQAVQTNDLKEVINKLIPDSTGK |
Parental | DIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYEPPVQESV |
DIE.ACQSIYPLHD.FVRKVKM..KPKFELGKLME.HGEG.SSGKATGDE.GAKVE.ADGYEP.VQESV | |
Retrocopy | DIEEACQSIYPLHDDFVRKVKMPRKPKFELGKLMEHHGEGGSSGKATGDERGAKVEQADGYEPLVQESV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |