RetrogeneDB ID: | retro_tbel_3966 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_45912:808..1433(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSTBEG00000002963 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 88.52 % |
Parental protein coverage: | 78.79 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | IASDGLKGRVFEVSLADLQNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKW-QTMIEAHV |
IA.D.LKG.VFEVSLADLQNDEV.FRKF.LITEDVQGKNCLTNFHGMDLT.DKMCS.VKK..QTMIEAHV | |
Retrocopy | IAPDSLKGHVFEVSLADLQNDEVSFRKFELITEDVQGKNCLTNFHGMDLTHDKMCSTVKKM>QTMIEAHV |
Parental | DVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGK |
DVKTT.GYLL.LFCVGFTKK.N.QI.KTSYAQ..QVRQIRKKMMEIMT.EVQT.DLKEVVNKLIPDSIGK | |
Retrocopy | DVKTTYGYLLHLFCVGFTKKGNDQIQKTSYAQYPQVRQIRKKMMEIMTQEVQTTDLKEVVNKLIPDSIGK |
Parental | DIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYEPPVQESV |
DIE.AC.SIYPLHDVFVRKVKML.K.KFELGKLMELHGEGSSSGKATGDE.G.KVERADGYEPPVQESV | |
Retrocopy | DIEEAC*SIYPLHDVFVRKVKMLMKYKFELGKLMELHGEGSSSGKATGDEKGTKVERADGYEPPVQESV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |