RetrogeneDB ID: | retro_mluc_2158 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL430065:427159..427603(+) | ||
Located in intron of: | ENSMLUG00000006613 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSMLUG00000014788 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 73.2 % |
Parental protein coverage: | 56.44 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | LTNFHGMDLTRDKMCSMVKKW-QTMIEAHVDVKT-TDGYLLR-LFCVGFTKKRNNQIRKTSYAQHQQVRQ |
L.NFHG..LT.DKM.SMVKK..QTMIEAHV.V....DG.LL..L.CVGFTK..N.QI.KTS.AQHQQVRQ | |
Retrocopy | LPNFHGVHLTQDKMGSMVKKTRQTMIEAHVEVNM<ADGCLLV<LLCVGFTKQCNLQIQKTS*AQHQQVRQ |
Parental | IRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVK-MLKKPKFELGKLMELH |
..K..MEIMTRE.QTNDLKEVVNKLIPD.IGK..EKACQ.I.PLHDVFVRKVK.MLKKP.FELG.LME.. | |
Retrocopy | TQK-VMEIMTREMQTNDLKEVVNKLIPDPIGKHTEKACQAIHPLHDVFVRKVK<MLKKPTFELGQLMEIQ |
Parental | GEGSSSGKATGDE |
GEG.SS.KA.G.. | |
Retrocopy | GEGLSSRKAKGEQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |