RetrogeneDB ID: | retro_tbel_4304 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_7607:40112..40596(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSTBEG00000002963 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 80.61 % |
Parental protein coverage: | 61.74 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | KDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEVAFRKFKLITEDVQ-GKNC |
K..YDVKAPAMFN.RNIGK.LVTRTQGTK.ASD.L.G.V.EVSL.DLQNDEVA.RKFKLITE.VQ.G.N. | |
Retrocopy | KEGYDVKAPAMFNTRNIGKILVTRTQGTKVASDSLTGCVLEVSLTDLQNDEVASRKFKLITEEVQ<GQN- |
Parental | LTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRK |
L.NFHGMDLTRD..CSMVKKWQTMIEAHV..K.T.GYLL.LFCVGFTKK.NNQ.RKTS.AQ.QQV.QIRK | |
Retrocopy | LPNFHGMDLTRDEICSMVKKWQTMIEAHVGLKKTSGYLLHLFCVGFTKKHNNQMRKTSNAQRQQVHQIRK |
Parental | KMM-EIMTREVQTNDLKEVVNKLIP |
KM..E.MTREVQ.NDLKEVVNKLIP | |
Retrocopy | KML<EVMTREVQANDLKEVVNKLIP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |