RetrogeneDB ID: | retro_tbel_1744 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_5615:330668..331457(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSTBEG00000002963 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 84.96 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MAVGKNKRLTKGGKKGAKKKVXDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVS |
MAVGKNK.LTKGGKKGAKKKV.DPFSK.DWYDV.APAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVS | |
Retrocopy | MAVGKNKLLTKGGKKGAKKKVVDPFSKRDWYDVEAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVS |
Parental | LADLQNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCV |
L.DLQNDEVAFR.FKLITEDVQGKNCLTNFHGMD.TRDKMCSMVKKW.TMIEAHV.VKT.DGYLLRLFCV | |
Retrocopy | LGDLQNDEVAFRTFKLITEDVQGKNCLTNFHGMDPTRDKMCSMVKKWETMIEAHVGVKTKDGYLLRLFCV |
Parental | GFTKKRNNQI-RKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNK-LIPDSIGKDIEKACQSIYPLH |
GFT.K..N.........Q.Q..R...K.M.EIMTREVQTNDLK.VVN..LIPDSIGKD.EKACQSIYPLH | |
Retrocopy | GFTNKCSNHT>KTSYAQQQQVRRIQTKMM-EIMTREVQTNDLKQVVNN<LIPDSIGKDTEKACQSIYPLH |
Parental | DVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYEPPVQESV |
DVFVRKV..LKKP.FELGKLMELHGEGS.S.KATGDETGAKVER.DGYEPPVQESV | |
Retrocopy | DVFVRKVTTLKKPRFELGKLMELHGEGSRSAKATGDETGAKVERIDGYEPPVQESV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |