Parental gene:

RPS3A, ENSSSCG00000009019

Aliases:None
Description:ribosomal protein S3A [Source:HGNC Symbol;Acc:10421]
Organism:Pig (Sus scrofa)
Coordinates:8:82594055..82598541(-)


>ENSSSCG00000009019
ATGGCGGTTGGCAAGAATAAGCGCCTTACGAAAGGCGGCAAAAAGGGAGCCAAGAAGAAAGTGGTTGACCCATTTTCTAA
GAAAGATTGGTATGATGTGAAAGCACCAGCTATGTTCAATATAAGAAATATTGGGAAAACACTGGTCACAAGAACTCAAG
GAACCAAAATTGCATCTGATGGCCTCAAGGGTCGTGTGTTTGAAGTGAGCCTTGCTGATCTGCAGAATGATGAAGTTGCA
TTTAGAAAATTCAAGCTGATTACTGAGGATGTTCAGGGCAAAAACTGCTTGACCAACTTCCACGGCATGGATCTTACCCG
TGACAAGATGTGCTCAATGGTCAAAAAATGGCAGACCATGATTGAAGCTCACGTTGATGTCAAGACTACCGATGGTTATT
TGCTTCGTCTGTTCTGTGTTGGTTTTACTAAAAAACGCAACAATCAGATTCGGAAGACCTCTTACGCTCAGCACCAACAA
GTCCGCCAAATCCGGAAGAAGATGATGGAAATCATGACCCGAGAGGTGCAGACAAATGACTTGAAAGAGGTGGTCAATAA
ATTGATTCCAGACAGCATTGGAAAGGACATAGAAAAGGCTTGCCAGTCTATTTATCCGCTTCATGACGTCTTCGTTAGAA
AAGTAAAAATGCTGAAGAAGCCCAAGTTTGAATTGGGAAAACTCATGGAGCTACATGGTGAAGGTAGTAGTTCTGGAAAA
GCTACTGGGGACGAGACAGGTGCTAAAGTTGAACGAGCTGATGGCTATGAGCCCCCAGTGCAAGAATCTGTTTAA

Library Parental gene expression (RPM)
SRP014902_placenta 281 .66 RPM
SRP014902_testis 599 .31 RPM
SRP018856_adipose 1162 .09 RPM
SRP018288_kidney 593 .30 RPM
SRP018288_lung 537 .03 RPM
SRP018288_liver 512 .99 RPM
SRP018288_heart 789 .40 RPM
SRP035408_liver 488 .04 RPM
SRP035408_brain 575 .50 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000002268 possible_ortholog 7 retrogenes
retro_cjac_2, retro_cjac_21, retro_cjac_249, retro_cjac_312, retro_cjac_337, retro_cjac_368, retro_cjac_78,
Dipodomys ordii ENSDORG00000002250 possible_ortholog 10 retrogenes
retro_dord_142, retro_dord_168, retro_dord_193, retro_dord_209, retro_dord_229, retro_dord_314, retro_dord_380, retro_dord_752, retro_dord_757, retro_dord_95,
Erinaceus europaeus ENSEEUG00000004994 possible_ortholog 4 retrogenes
retro_eeur_297, retro_eeur_510, retro_eeur_517, retro_eeur_66,
Homo sapiens ENSG00000145425 ortholog_one2one 40 retrogenes
retro_hsap_1080, retro_hsap_1178, retro_hsap_1320, retro_hsap_144, retro_hsap_1507, retro_hsap_1559, retro_hsap_1620, retro_hsap_1891, retro_hsap_1994, retro_hsap_2575, retro_hsap_2578, retro_hsap_2607, retro_hsap_2700, retro_hsap_274, retro_hsap_2803, retro_hsap_2908, retro_hsap_2909, retro_hsap_3020, retro_hsap_3112, retro_hsap_313, retro_hsap_3213, retro_hsap_3366, retro_hsap_3675, retro_hsap_3876, retro_hsap_3878, retro_hsap_3879, retro_hsap_3910, retro_hsap_3929, retro_hsap_3931, retro_hsap_4017, retro_hsap_4020, retro_hsap_4021, retro_hsap_588, retro_hsap_602, retro_hsap_613, retro_hsap_683, retro_hsap_789, retro_hsap_838, retro_hsap_888, retro_hsap_914,
Gorilla gorilla ENSGGOG00000003182 possible_ortholog 2 retrogenes
retro_ggor_70, retro_ggor_97,
Myotis lucifugus ENSMLUG00000014788 ortholog_one2one 8 retrogenes
retro_mluc_1197, retro_mluc_1397, retro_mluc_1568, retro_mluc_1846, retro_mluc_2130, retro_mluc_2158, retro_mluc_2388, retro_mluc_862,
Macaca mulatta ENSMMUG00000021821 possible_ortholog 1 retrogene
retro_mmul_2297,
Monodelphis domestica ENSMODG00000000969 ortholog_one2many 6 retrogenes
retro_mdom_1040, retro_mdom_1229, retro_mdom_1396, retro_mdom_1480, retro_mdom_627, retro_mdom_694,
Mus musculus ENSMUSG00000028081 possible_ortholog 2 retrogenes
retro_mmus_218, retro_mmus_254,
Nomascus leucogenys ENSNLEG00000005815 ortholog_one2one 26 retrogenes
retro_nleu_1160, retro_nleu_1177, retro_nleu_1402, retro_nleu_1472, retro_nleu_1483, retro_nleu_1487, retro_nleu_1816, retro_nleu_1878, retro_nleu_1992, retro_nleu_209, retro_nleu_2437, retro_nleu_2567, retro_nleu_2571, retro_nleu_2753, retro_nleu_281, retro_nleu_2979, retro_nleu_3087, retro_nleu_443, retro_nleu_526, retro_nleu_654, retro_nleu_658, retro_nleu_758, retro_nleu_767, retro_nleu_799, retro_nleu_942, retro_nleu_962,
Oryctolagus cuniculus ENSOCUG00000007011 ortholog_one2many 1 retrogene
retro_ocun_257,
Rattus norvegicus ENSRNOG00000011893 possible_ortholog 1 retrogene
retro_rnor_198,
Sarcophilus harrisii ENSSHAG00000015088 ortholog_many2many 2 retrogenes
retro_shar_777, retro_shar_95,
Tupaia belangeri ENSTBEG00000002963 ortholog_one2one 98 retrogenes
retro_tbel_1005, retro_tbel_11, retro_tbel_1119, retro_tbel_116, retro_tbel_1232, retro_tbel_1318, retro_tbel_133, retro_tbel_137, retro_tbel_1375, retro_tbel_1378, retro_tbel_1383, retro_tbel_1417, retro_tbel_1421, retro_tbel_1509, retro_tbel_1686, retro_tbel_1698, retro_tbel_172, retro_tbel_1720, retro_tbel_1721, retro_tbel_1744, retro_tbel_1814, retro_tbel_1829, retro_tbel_1856, retro_tbel_1896, retro_tbel_1948, retro_tbel_1960, retro_tbel_1999, retro_tbel_206, retro_tbel_2200, retro_tbel_2306, retro_tbel_2463, retro_tbel_2483, retro_tbel_2510, retro_tbel_2626, retro_tbel_2654, retro_tbel_2657, retro_tbel_2745, retro_tbel_2759, retro_tbel_2760, retro_tbel_2764, retro_tbel_281, retro_tbel_2857, retro_tbel_2957, retro_tbel_2959, retro_tbel_3114, retro_tbel_317, retro_tbel_3212, retro_tbel_3255, retro_tbel_3259, retro_tbel_3299, retro_tbel_336, retro_tbel_3372, retro_tbel_3416, retro_tbel_3471, retro_tbel_3486, retro_tbel_3513, retro_tbel_3558, retro_tbel_3613, retro_tbel_3631, retro_tbel_3655, retro_tbel_3705, retro_tbel_373, retro_tbel_375, retro_tbel_3755, retro_tbel_3786, retro_tbel_3815, retro_tbel_3823, retro_tbel_3832, retro_tbel_386, retro_tbel_3882, retro_tbel_39, retro_tbel_3947, retro_tbel_3966, retro_tbel_399, retro_tbel_4116, retro_tbel_4144, retro_tbel_4147, retro_tbel_4211, retro_tbel_4220, retro_tbel_423, retro_tbel_4294, retro_tbel_4304, retro_tbel_4347, retro_tbel_438, retro_tbel_4428, retro_tbel_445, retro_tbel_4579, retro_tbel_598, retro_tbel_619, retro_tbel_623, retro_tbel_671, retro_tbel_859, retro_tbel_90, retro_tbel_912, retro_tbel_92, retro_tbel_928, retro_tbel_956, retro_tbel_973,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_27 94.42 95.08
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2. retro_sscr_749 83.33 56.44
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3. retro_sscr_762 83.33 56.44
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Download FASTA sequences of all ENSSSCG00000009019 retrocopies