RetrogeneDB ID: | retro_tbel_386 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_1919:176540..177285(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSTBEG00000002963 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 71.43 % |
Parental protein coverage: | 94.7 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 8 |
Parental | KGAKKKVX-DPFSKKDWYDVKAPAMFNIRNIGK-TLVTRTQGTKIASDGLKGRVFEVSLADLQNDEVAFR |
K.AK.KV..DPFSK.DW..VK...M.NIRNIGK.T.V.RTQ.TKIASDG.KG.VFEVSLA.LQNDEV.F. | |
Retrocopy | KEAK*KVL<DPFSKNDWH-VKVLVMPNIRNIGK>TVVVRTQETKIASDGQKGCVFEVSLANLQNDEVTFW |
Parental | KFKLITEDVQGKNCLTNFHGMDLTRDKMCSMV-KKWQTM-IEAHVDVKTTDGYLLRLFCVGFTKKR-NNQ |
K..LIT.DVQGKNCL.NFHG.DLT.DK.C.M..KKWQTM.IEAHVDVK.T..YLL.LFC.GFTKK..NNQ | |
Retrocopy | KITLITVDVQGKNCLFNFHGVDLTHDKLCFMI>KKWQTMIIEAHVDVKITNSYLLHLFCAGFTKKL>NNQ |
Parental | IRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVV-NKLIPDSIG-KDIEKACQSIYPLHDVFVRKVKM |
..K..YAQ.QQV.QI....MEIM..EV.TN.LK.V...KLIPDSIG.KDIEKACQS.YPLHDVF.RKVKM | |
Retrocopy | MQKSPYAQYQQVHQIWETVMEIMAQEVKTNELKDVA<QKLIPDSIG<KDIEKACQSVYPLHDVFIRKVKM |
Parental | LKKPKFELGKLMEL-HGEGSSSGKATGDE-TGAKVERADGYEPPVQESV |
LKKPKFELGKLM.L..GEG...GKA.GDE..G.KV..ADGYEP.VQ.S. | |
Retrocopy | LKKPKFELGKLMSL<RGEG-NGGKAIGDE<DGTKVK*ADGYEPLVQKSL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |