RetrogeneDB ID: | retro_tbel_1509 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_4921:162198..162583(-) | ||
Located in intron of: | ENSTBEG00000014213 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSTBEG00000002963 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 62.5 % |
Parental protein coverage: | 50.76 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | DGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEV-VNKLIPDSIGKDIEK |
.G..L.L.C.GFTKK.NNQI.KTSYA......Q........M..E..TND.KE..VN.L.PD..GK.IEK | |
Retrocopy | NGHFLHLLCIGFTKKCNNQIWKTSYARY---QQVHQIWKKMM--ETMTNDIKEM<VNRLVPDVTGKEIEK |
Parental | ACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHG-EGSSSGKATGDETGAKVERADGYEPPVQESV |
A.QSIYPLHDVF.RKVKMLKK...ELGKLME.HG.....SGKATGDETG.K.E.ADG.EPPV.E.V | |
Retrocopy | AFQSIYPLHDVFIRKVKMLKKLRSELGKLMEFHG<LNNGSGKATGDETGSKFEQADGHEPPV*EAV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |