RetrogeneDB ID: | retro_tbel_3631 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_14739:14047..14489(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSTBEG00000002963 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 76.51 % |
Parental protein coverage: | 56.06 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | WQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVN |
W..MIEAHVDVKT.DGYLLRLFCVG.T.K..NQI.KTS.AQHQQVRQIRKKMMEIMT.EVQ.ND.KEVV. | |
Retrocopy | W*IMIEAHVDVKTIDGYLLRLFCVGLTNKHKNQIQKTSHAQHQQVRQIRKKMMEIMTCEVQKNDSKEVVT |
Parental | KLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGK-LMELHGEGSSSGKATGDETGAKVERADG |
KLIPDS.GKD.EKA.QSIY.LH.VFV.K...........GK.LMELHGEG..SGKATGDETG.KVE.ADG | |
Retrocopy | KLIPDSTGKDKEKAWQSIYSLHEVFVIK-ENAEEAQV*IGK>LMELHGEGNNSGKATGDETGTKVE*ADG |
Parental | YEPPVQESV |
YEPPVQESV | |
Retrocopy | YEPPVQESV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |