RetrogeneDB ID: | retro_tbel_206 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_1458:170569..171369(+) | ||
Located in intron of: | ENSTBEG00000012743 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSTBEG00000002963 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 80.15 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 6 |
Parental | MAVGKNKR-LTKGGKKGAKKKVXDPFSKKDW-YDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFE |
MA.GKNK..L.KG.KKGAKKKV.D.FSKKDW...VKAPAMFNIRNIGKTLV.RTQGT.IAS.G.K..VFE | |
Retrocopy | MAIGKNKV>LKKGSKKGAKKKVVDIFSKKDW>NNVKAPAMFNIRNIGKTLVSRTQGTQIASVGFKRFVFE |
Parental | VSLADLQNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDK-MCSMVKK-WQTMIEAH-VDVKTTDGYLL |
VSLADLQNDE..FRK.KLIT.DVQGKNCLTNFHGMDLT.DK.MCSMVKK.WQTMIEAH...VKTT.G.LL | |
Retrocopy | VSLADLQNDEITFRKLKLITKDVQGKNCLTNFHGMDLTHDK<MCSMVKK>WQTMIEAH<FNVKTTNGHLL |
Parental | RLFCVGFTKKRNNQI-RKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSI |
.LFCVGFTKK.NNQI..KTSYAQHQQV.QI.KKM.EIMT.EV.T.DLKEV.NK.IP.S..KD.EKAC.SI | |
Retrocopy | HLFCVGFTKKCNNQI>QKTSYAQHQQVHQIQKKMREIMTWEV*TKDLKEVANKWIPGSTVKDLEKACLSI |
Parental | YPLHDVFVRKVKMLKKPKFELGKLMEL--HGEGSSSGKATGDETGAKVERADGYEPPVQESV |
YPLH.VF.RKVKMLKKPKF.LGKLMEL...GEGSSSGKATGDE.G.KVERADGYEPPVQ.SV | |
Retrocopy | YPLHVVFIRKVKMLKKPKFKLGKLMELLPPGEGSSSGKATGDEMGSKVERADGYEPPVQ*SV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |