RetrogeneDB ID: | retro_tbel_2857 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_121253:24564..25304(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSTBEG00000002963 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 85.26 % |
Parental protein coverage: | 94.32 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | VGKNKRLTKGGKKGAKKKVXDP-FSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFE-VS |
VGKNK.LTKGGKKGAKKKV..P.F.KK.....KAPAMFNI.NIGKT.V.RTQGTKIASDGLKG.VF...S | |
Retrocopy | VGKNKHLTKGGKKGAKKKVINP>FLKK--IGMKAPAMFNIKNIGKTPVSRTQGTKIASDGLKGLVFD>LS |
Parental | LADLQNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCV |
LADLQNDEVAFRKFKLITEDVQGKNCLTNFHGMDL..DKMCSMVKKW.TM.EA.VDVKTT.GYLL.LFCV | |
Retrocopy | LADLQNDEVAFRKFKLITEDVQGKNCLTNFHGMDLINDKMCSMVKKW*TMTEACVDVKTTNGYLLCLFCV |
Parental | GFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDV |
GFTKK.N..IRK.SYAQHQ.V.QI.KKM.EIMT.EV.TNDLKEVVNK.IPDSIGKDIEKACQSIYPLHDV | |
Retrocopy | GFTKKCNDHIRKISYAQHQ-VHQIWKKMVEIMTWEV*TNDLKEVVNKMIPDSIGKDIEKACQSIYPLHDV |
Parental | FVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVE |
F.RKVKMLKKPKFELGKLMELHGEGS.SGKATGDETGAKVE | |
Retrocopy | FIRKVKMLKKPKFELGKLMELHGEGSRSGKATGDETGAKVE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |