RetrogeneDB ID: | retro_tbel_928 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_3332:98492..98951(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSTBEG00000002963 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 91.5 % |
Parental protein coverage: | 57.95 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | SMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDL |
SMVK.WQTMIE.HV.VKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQI.KK.MEIMT.EVQTN.L | |
Retrocopy | SMVK*WQTMIEVHVNVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIQKKIMEIMTWEVQTNGL |
Parental | KEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVE |
KEVVNKLIPDSIGKDIEKAC.SIYPLH.VF.RKVKM.KKPKFELGKLME.HGEGSSSGKATGDE.GAKVE | |
Retrocopy | KEVVNKLIPDSIGKDIEKACESIYPLHNVFIRKVKMQKKPKFELGKLMEFHGEGSSSGKATGDEMGAKVE |
Parental | RADGYEPPVQESV |
RADGYEPPVQESV | |
Retrocopy | RADGYEPPVQESV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |