RetrogeneDB ID: | retro_tbel_859 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_3165:550950..551586(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSTBEG00000002963 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 72.97 % |
Parental protein coverage: | 81.82 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 6 |
Parental | VTRTQGTKIASDGL-KGRVFEVSLADLQNDEVAFRKFKLITEDVQGKNCLTNFHGMDLT-RDKM-CSMVK |
VTRTQGTKIASD.L.KGRVFEVS.ADLQND.V..RKFKL.......K.....F..MDLT.RDK..CSMVK | |
Retrocopy | VTRTQGTKIASDAL<KGRVFEVSFADLQNDGVTLRKFKLMMKTFRAKTAY--FYSMDLT<RDKR<CSMVK |
Parental | KWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYA-QHQQVRQIRKKMMEIMTREVQTNDLKEV |
KWQ.M..AHVD..TTDGY.L.LFCVGFT.K..N.IRKTS.A.QHQQ.R.I.KK.MEIMTREVQTND.KEV | |
Retrocopy | KWQAMTDAHVDLETTDGYWLHLFCVGFTEKCSNRIRKTSHA<QHQQARHIQKKRMEIMTREVQTNDSKEV |
Parental | VNKLIPDSIG-KDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEG-SSSGKATGDETGAKVER |
..KLIPDSIG.KD.EKACQSI.PL..VFVRKVKML.KP.F.LGKL.ELHGEG.SSSGKAT.D.TGAKV.. | |
Retrocopy | DDKLIPDSIG<KDTEKACQSICPLRNVFVRKVKMLRKPNFALGKLVELHGEG<SSSGKATADGTGAKVQQ |
Parental | ADGYEPPVQESV |
ADGY.PP..ESV | |
Retrocopy | ADGYGPPGRESV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |