RetrogeneDB ID: | retro_tbel_4144 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_68778:3023..3547(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSTBEG00000002963 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 90.56 % |
Parental protein coverage: | 66.29 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 5 |
Parental | MAVGKNKRLTKGGKKGA-KKKVXDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEV |
MAVGKNK.LTKGGKKGA..KKV.DPFSKKDWYDVKAPAMFNIRNIGK.LVTRTQG.KIASDGL.G.VFEV | |
Retrocopy | MAVGKNKHLTKGGKKGA<MKKVVDPFSKKDWYDVKAPAMFNIRNIGKILVTRTQGNKIASDGLNGLVFEV |
Parental | SLADLQNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHV-DVKTTDGYLL-RL |
SLADLQNDEVAFRKFKLITEDVQGKN.LTNFHGMDLTRDKMCSMVKKWQTMIEAHV.DVKTTDGYLL..L | |
Retrocopy | SLADLQNDEVAFRKFKLITEDVQGKN*LTNFHGMDLTRDKMCSMVKKWQTMIEAHV<DVKTTDGYLL>HL |
Parental | FCVGFTKKRN-NQIRKTSYAQHQQV-RQIRKKMMEIMTRE |
FCVGFTKKRN.NQI.KTSYAQHQQV.RQI.KKMMEIMT.E | |
Retrocopy | FCVGFTKKRN>NQIWKTSYAQHQQV<RQIQKKMMEIMTWE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |