RetrogeneDB ID: | retro_tbel_4347 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_77907:3597..4200(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSTBEG00000002963 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 73.66 % |
Parental protein coverage: | 76.89 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | AVGKNK-RLTKGGKKGAKKKVXDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVS |
AVGKNK..LTK...K..KKKV.DPFSKKDW..VK.PAMFNIRNIGKTLVTR.QGTKI.S.GLK..VFEV. | |
Retrocopy | AVGKNK>ALTKVINKETKKKVIDPFSKKDWSNVKVPAMFNIRNIGKTLVTRAQGTKIMSVGLKDCVFEVN |
Parental | LADLQNDEVAFRKFKLITEDVQG-KNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFC |
..DLQNDEVA.RKFKL.TEDVQ..KN.L.NFHG.DLT..K.C..V.KW...I..HVDVKT.DGYLL.LF. | |
Retrocopy | FVDLQNDEVAIRKFKLVTEDVQR<KN-LPNFHGIDLTYNKICLIVQKWRAVIDVHVDVKTIDGYLLHLF* |
Parental | VGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSI |
.GFTKK.N.QI.KTSYAQH.Q..QI..KMMEIMTREVQ..DLK.VVNKL.PDSIGKD.EKACQSI | |
Retrocopy | IGFTKKHNKQIWKTSYAQH*QLQQI-QKMMEIMTREVQKSDLKKVVNKLMPDSIGKDVEKACQSI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |