RetrogeneDB ID: | retro_tbel_1375 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_4536:228259..228691(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSTBEG00000002963 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 82.88 % |
Parental protein coverage: | 54.17 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | EAHVDVKTTDGYLLRLFCVGFTKKR-NNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIP |
E.H.D.KTT.GYLL.LFCVGFTKK..NNQI.KTSYA.HQ.V.QI.KKMMEIMTREVQTNDLKEVVNKLIP | |
Retrocopy | ETHIDIKTTKGYLLLLFCVGFTKKV>NNQIWKTSYA*HQRVHQIWKKMMEIMTREVQTNDLKEVVNKLIP |
Parental | DSIGKDI-EKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGE-GSSSGKATGDETGAKVERADGYEP |
DSI.KDI..K.C.S.YPLHDVFVRKVKMLKKPKF.LGKL.ELHGE.GSSSGKATG.ETGA.VERADGYE. | |
Retrocopy | DSIEKDI>KKTCHSVYPLHDVFVRKVKMLKKPKFALGKLIELHGE>GSSSGKATGNETGARVERADGYE* |
Parental | PVQESV |
P.QESV | |
Retrocopy | PIQESV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |