RetrogeneDB ID: | retro_tbel_3823 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_16913:65503..66295(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSTBEG00000002963 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 95.45 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MAVGKNKRLTKGGKKGAKKKVXDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVS |
M..GKNK.L.KGGKKGA.KKV.DPFSKKDWYD.KA.AMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVS | |
Retrocopy | MVDGKNKHLMKGGKKGA*KKVVDPFSKKDWYDMKALAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVS |
Parental | LADLQNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCV |
LADLQNDEVAFRKFKLITEDVQGKNCLTNFHGMDLT.DKMCSM.KKWQTMIEAHVDVKTTDGYLLRLFCV | |
Retrocopy | LADLQNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTHDKMCSMAKKWQTMIEAHVDVKTTDGYLLRLFCV |
Parental | GFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDV |
GFTKK.NNQIRKTSYAQHQQVRQIRKKMMEIMT.EVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDV | |
Retrocopy | GFTKKCNNQIRKTSYAQHQQVRQIRKKMMEIMTWEVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDV |
Parental | FVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYEPPVQESV |
FVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYEPPVQESV | |
Retrocopy | FVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYEPPVQESV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |