RetrogeneDB ID: | retro_tbel_172 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_1367:394533..395029(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSTBEG00000002963 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 86.47 % |
Parental protein coverage: | 63.64 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | LTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRK |
L..F.GMDLTRDKMC.MVKKWQTMIEA.VD..TTDG.LLRLFC.GFTKKRNNQIRKTSY.QHQQVRQIR. | |
Retrocopy | LPDFQGMDLTRDKMCPMVKKWQTMIEAPVDA*TTDGHLLRLFCFGFTKKRNNQIRKTSYPQHQQVRQIR- |
Parental | KMMEIMTREVQTNDLKEVVNKLIP-DSIG-KDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGE |
KMMEIMTREVQT.DLKEVVNKLIP..SIG.KDIEKACQ.IYPLHDVFVRKVKMLKKP.F.LGKLMELHGE | |
Retrocopy | KMMEIMTREVQTDDLKEVVNKLIP<SSIG<KDIEKACQFIYPLHDVFVRKVKMLKKPRFGLGKLMELHGE |
Parental | GSSSGKATGDETGAKVERADGYEPPVQESV |
GS....ATGDETGAKVERADGYEPP.QESV | |
Retrocopy | GSNF-SATGDETGAKVERADGYEPPAQESV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |