RetrogeneDB ID: | retro_tbel_445 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_2095:127707..128494(+) | ||
Located in intron of: | ENSTBEG00000001636 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSTBEG00000002963 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 88.35 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MAVGKNKRLTKGGKKGAKKKVXDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVS |
M.VGKNK.L.KG.KKGAKKKV.DPFS.KDWYDVKAPA.F.IRNIGKTLVTRTQGTKIASDGLKGRVFEVS | |
Retrocopy | MVVGKNKHLMKGSKKGAKKKVVDPFSEKDWYDVKAPARFDIRNIGKTLVTRTQGTKIASDGLKGRVFEVS |
Parental | LADLQNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCV |
LADLQND.VAFRKFKLI.E.VQGK.CLT.FHG.DLTRDKMCSMVKKWQTMIEAHVDV.TTDGYLL..FCV | |
Retrocopy | LADLQNDKVAFRKFKLIAEHVQGKHCLTSFHGLDLTRDKMCSMVKKWQTMIEAHVDVRTTDGYLLCRFCV |
Parental | GFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIP-DSIG-KDIEKACQSIYPLH |
GFTKKRNNQI.KTSYAQHQQVRQIRKKMM.IMTREVQT.DLKEVVNKLIP..SIG.KDIEKACQ.IYPLH | |
Retrocopy | GFTKKRNNQIQKTSYAQHQQVRQIRKKMM*IMTREVQTDDLKEVVNKLIP<SSIG<KDIEKACQFIYPLH |
Parental | DVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYEPPVQESV |
DVFVRKVKMLKKP.F.LGKLMELHGEGS....ATGDETGAKVERADGYEPP.QESV | |
Retrocopy | DVFVRKVKMLKKPRFGLGKLMELHGEGSNF-SATGDETGAKVERADGYEPPAQESV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |