RetrogeneDB ID:

retro_mluc_1846

Retrocopy
location
Organism:Microbat (Myotis lucifugus)
Coordinates:GL429928:1154155..1154793(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSMLUG00000011549
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:RPS3A
Ensembl ID:ENSMLUG00000014788
Aliases:None
Description:ribosomal protein S3A [Source:HGNC Symbol;Acc:10421]


Retrocopy-Parental alignment summary:






>retro_mluc_1846
ACTAGAACTCAAGGAACCAAACTGGCATCTGATGGTCTCAAGGGTCATATTTTTGAAGTGAGCCTTGCTGACCTGCAGAA
TGATGAAGTTGCATTTATACAATTCAAGCTAATTACTGGGGATGTTCAGGGCAAAAACTGCCTGACTGATTTCTATGGCA
TGGATCTTACCCATGACAAAATGTGCTCCATAGTCAAAAATGGCAGACCATGATTGAAGTTCATGTTGATGTCAAGACTA
CTGATAGTTATTTGCTTCATCTATTCTGTGTTGGTTTTGCTAGAAAACCCAACAATCAGATTTGGAAGACCTCTTATGCT
CAGCATCAACAGGTTCACCAAATCCTAAAGAAGATGATAGAAATCATGACCCAAAAGGTGCAGACAAATGACTTGAAAGT
AGTGGTCAATAAACTGATGCCAGAGAGCACTGGAAAACACATAGAAAAGGCTTGCCAATCTATTTATCCACTCTATGATG
TCTTTGTTAGAAAAGTCAAAATGCTGAAGAAGCCTAAATTTGAATTGGTAAAACTGGTGGAGCTCCACTATGAAAGCAGC
AGTTCTGGAAAAGCGACTGGAGATCAGACAGGTGCCAATGTTGAACTAGCTGATGGATAGGAGACTCTAGTCCAAGAA

ORF - retro_mluc_1846 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 81.78 %
Parental protein coverage: 80.68 %
Number of stop codons detected: 1
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalTRTQGTKIASDGLKGRVFEVSLADLQNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVK-KWQ
TRTQGTK.ASDGLKG..FEVSLADLQNDEVAF..FKLIT.DVQGKNCLT.F.GMDLT.DKMCS.VK.KWQ
RetrocopyTRTQGTKLASDGLKGHIFEVSLADLQNDEVAFIQFKLITGDVQGKNCLTDFYGMDLTHDKMCSIVK<KWQ
ParentalTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKL
TMIE.HVDVKTTD.YLL.LFCVGF..K.NNQI.KTSYAQHQQV.QI.KKM.EIMT..VQTNDLK.VVNKL
RetrocopyTMIEVHVDVKTTDSYLLHLFCVGFARKPNNQIWKTSYAQHQQVHQILKKMIEIMTQKVQTNDLKVVVNKL
ParentalIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYEP
.P.S.GK.IEKACQSIYPL.DVFVRKVKMLKKPKFEL.KL.ELH.E.SSSGKATGD.TGA.VE.ADG.E.
RetrocopyMPESTGKHIEKACQSIYPLYDVFVRKVKMLKKPKFELVKLVELHYESSSSGKATGDQTGANVELADG*ET
ParentalPVQE
.VQE
RetrocopyLVQE

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Myotis lucifugus was not studied using RNA-Seq expression data.
Myotis lucifugus was not studied using ChIP-Seq data.
Myotis lucifugus was not studied using EST data.
Myotis lucifugus was not studied using FANTOM5 data.
retro_mluc_1846 was not experimentally validated.

Retrocopy orthology:
Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 15 parental genes, and 211 retrocopies.

Species Parental gene accession Retrocopies number
Callithrix jacchus ENSCJAG000000022687 retrocopies
Dipodomys ordii ENSDORG0000000225010 retrocopies
Erinaceus europaeus ENSEEUG000000049944 retrocopies
Homo sapiens ENSG0000014542540 retrocopies
Gorilla gorilla ENSGGOG000000031822 retrocopies
Myotis lucifugus ENSMLUG00000014788 8 retrocopies
Macaca mulatta ENSMMUG000000218211 retrocopy
Monodelphis domestica ENSMODG000000009696 retrocopies
Mus musculus ENSMUSG000000280812 retrocopies
Nomascus leucogenys ENSNLEG0000000581526 retrocopies
Oryctolagus cuniculus ENSOCUG000000070111 retrocopy
Rattus norvegicus ENSRNOG000000118931 retrocopy
Sarcophilus harrisii ENSSHAG000000150882 retrocopies
Sus scrofa ENSSSCG000000090193 retrocopies
Tupaia belangeri ENSTBEG0000000296398 retrocopies
retro_tbel_1005, retro_tbel_11, retro_tbel_1119, retro_tbel_116, retro_tbel_1232, retro_tbel_1318, retro_tbel_133, retro_tbel_137, retro_tbel_1375, retro_tbel_1378, retro_tbel_1383, retro_tbel_1417, retro_tbel_1421, retro_tbel_1509, retro_tbel_1686, retro_tbel_1698, retro_tbel_172, retro_tbel_1720, retro_tbel_1721, retro_tbel_1744, retro_tbel_1814, retro_tbel_1829, retro_tbel_1856, retro_tbel_1896, retro_tbel_1948, retro_tbel_1960, retro_tbel_1999, retro_tbel_206, retro_tbel_2200, retro_tbel_2306, retro_tbel_2463, retro_tbel_2483, retro_tbel_2510, retro_tbel_2626, retro_tbel_2654, retro_tbel_2657, retro_tbel_2745, retro_tbel_2759, retro_tbel_2760, retro_tbel_2764, retro_tbel_281, retro_tbel_2857, retro_tbel_2957, retro_tbel_2959, retro_tbel_3114, retro_tbel_317, retro_tbel_3212, retro_tbel_3255, retro_tbel_3259, retro_tbel_3299, retro_tbel_336, retro_tbel_3372, retro_tbel_3416, retro_tbel_3471, retro_tbel_3486, retro_tbel_3513, retro_tbel_3558, retro_tbel_3613, retro_tbel_3631, retro_tbel_3655, retro_tbel_3705, retro_tbel_373, retro_tbel_375, retro_tbel_3755, retro_tbel_3786, retro_tbel_3815, retro_tbel_3823, retro_tbel_3832, retro_tbel_386, retro_tbel_3882, retro_tbel_39, retro_tbel_3947, retro_tbel_3966, retro_tbel_399, retro_tbel_4116, retro_tbel_4144, retro_tbel_4147, retro_tbel_4211, retro_tbel_4220, retro_tbel_423, retro_tbel_4294, retro_tbel_4304, retro_tbel_4347, retro_tbel_438, retro_tbel_4428, retro_tbel_445, retro_tbel_4579, retro_tbel_598, retro_tbel_619, retro_tbel_623, retro_tbel_671, retro_tbel_859, retro_tbel_90, retro_tbel_912, retro_tbel_92, retro_tbel_928, retro_tbel_956, retro_tbel_973,



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