RetrogeneDB ID: | retro_nleu_2567 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397373.1:5659621..5660251(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSNLEG00000005815 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 76.89 % |
Parental protein coverage: | 79.55 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | VKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEVAFRKFKLITEDVQGKNCLTNFHG |
VKAP..FNIRNI..TLVTRTQGTKIASDGLKG.VFE.SL.DLQNDEVA.RK.K.ITEDVQGKNCL.NFHG | |
Retrocopy | VKAPVIFNIRNI*QTLVTRTQGTKIASDGLKGHVFEASLVDLQNDEVALRKLKRITEDVQGKNCLPNFHG |
Parental | MDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIM |
MDLT.DKMCSM.KKWQTM.EAHVDVKT...YLL.LFCV...KK.NNQIRK.SY.QHQQV.Q..KKMMEIM | |
Retrocopy | MDLTCDKMCSMAKKWQTMTEAHVDVKTISDYLLCLFCVVLLKKCNNQIRKPSYTQHQQVCQVWKKMMEIM |
Parental | TREVQTNDLKEVVNKLIPDSI-GKDIEKACQSIYPLHDVFVRKVKMLK-KPKFELGKLMELHGEGSSSGK |
T.EVQT..LKEVVNK.IPD.I..KDI.K.CQS.Y...DVF..KVKM.K.KPKFELGK..ELHGEG.S..K | |
Retrocopy | TQEVQTSGLKEVVNKWIPDGI>EKDIGKTCQSVYLPCDVFISKVKMWK<KPKFELGKHTELHGEGRSTRK |
Parental | AT |
AT | |
Retrocopy | AT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |