RetrogeneDB ID: | retro_tbel_336 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_1802:228587..229377(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSTBEG00000002963 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 90.6 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MAVGKNKRLTK-GGKKGAKKKVXDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEV |
M.VGKNKRL.K.GGKKGAKKKV.DPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKI.S..LKG.VFEV | |
Retrocopy | MVVGKNKRLMK<GGKKGAKKKVVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIMSNDLKGHVFEV |
Parental | SLADLQNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFC |
SLADLQ.DEVAFRKFKLITEDVQGKNCLTNFH.MDLT.DKMCSM.KKWQTMIEAHVDVKTTDGYLL.LFC | |
Retrocopy | SLADLQKDEVAFRKFKLITEDVQGKNCLTNFHDMDLTCDKMCSMIKKWQTMIEAHVDVKTTDGYLLHLFC |
Parental | VGFTKKRNNQIRKTSYAQHQQVRQIRKKMME-IMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLH |
VGFTKK.NNQI.KTSYAQHQQVRQIRKKMM...MTREV.TNDLKEVV.KLIPDSIGKDIEKACQSIYPLH | |
Retrocopy | VGFTKKCNNQIWKTSYAQHQQVRQIRKKMMD<LMTREV*TNDLKEVVDKLIPDSIGKDIEKACQSIYPLH |
Parental | DVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYEPPVQESV |
DVFVRKVKMLKKP.FELGKLMELH.EGSSSGKATGDETG.KVER.DGYEPP.QESV | |
Retrocopy | DVFVRKVKMLKKPRFELGKLMELHSEGSSSGKATGDETGTKVERPDGYEPPAQESV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |