RetrogeneDB ID: | retro_tbel_1999 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_625:685200..685651(-) | ||
Located in intron of: | ENSTBEG00000007720 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSTBEG00000002963 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 78.85 % |
Parental protein coverage: | 58.71 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTN |
.CSMVKKWQTMIE.HVDV.TT.GY.L.LFCV.FTKK..NQIRKTS.AQHQ.V.QI.K..MEIMT.EVQ.N | |
Retrocopy | VCSMVKKWQTMIETHVDV*TTSGYFLHLFCVWFTKKCGNQIRKTSFAQHQRVHQIQK--MEIMTQEVQKN |
Parental | DLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKV-KMLKKPKFELGKLMELHGEGSSSGKATGDETGA |
DLKE.VNKLIPDSIGKD......SI.PLHDVFVRKV.KMLKKPKFELGKLMELHGE.SS.GK.TGD.TGA | |
Retrocopy | DLKEMVNKLIPDSIGKDTD---LSICPLHDVFVRKV>KMLKKPKFELGKLMELHGEVSSFGKTTGDDTGA |
Parental | KVERADGYEPPVQESV |
KVE.AD..EPPVQESV | |
Retrocopy | KVEQADKNEPPVQESV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |