RetrogeneDB ID: | retro_tbel_3416 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_139698:87204..87705(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSTBEG00000002963 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 94.05 % |
Parental protein coverage: | 63.64 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | LTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRK |
L.NFHGMDLT.DKMCSMVKKWQTMIEAHVDVKTTDGYLL.LFCVGFTKK.NNQI.KTS.AQHQQVRQI.K | |
Retrocopy | LPNFHGMDLTCDKMCSMVKKWQTMIEAHVDVKTTDGYLLCLFCVGFTKKHNNQIGKTSSAQHQQVRQIQK |
Parental | KMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGS |
.MMEI..REVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGS | |
Retrocopy | -MMEIVIREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGS |
Parental | SSGKATGDETGAKVERADGYEPPVQESV |
SSGKATGDETGAKVERADGYEPPVQESV | |
Retrocopy | SSGKATGDETGAKVERADGYEPPVQESV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |