RetrogeneDB ID: | retro_tbel_4294 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_75667:3619..4049(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSTBEG00000002963 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 76.19 % |
Parental protein coverage: | 54.92 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | GKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQ-IRKTSYAQHQQV |
GK.CLTN.HGMDLT.DK.C.MVKKWQT.IEA.VDVKTT.GYLL.L.CVGFTKKRNNQ.I..TSY.Q.QQV | |
Retrocopy | GKHCLTNCHGMDLTWDKVCFMVKKWQTKIEALVDVKTTRGYLLCLSCVGFTKKRNNQ<IWRTSYTQRQQV |
Parental | RQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIG-KDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLME |
.QI..K.M.IMT.EVQTNDLKE.VN.L..D.IG.KD.EKAC.SIY.L.DVF.RK.KMLKKP.FELGKLME | |
Retrocopy | CQI-WKTMRIMTWEVQTNDLKEEVNTLSLDGIG<KDVEKACESIYVLRDVFIRKLKMLKKPRFELGKLME |
Parental | LHGEGSS |
LHGEG.S | |
Retrocopy | LHGEGIS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |